Gene Information

Name : Ser39006_0840 (Ser39006_0840)
Accession : YP_008521222.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : Ribokinase
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.1.15
Position : 929769 - 931049 bp
Length : 1281 bp
Strand : -
Note : PFAM: PfkB domain protein, regulatory protein DeoR; KEGG: ribokinase; SMART: regulatory protein DeoR

DNA sequence :
ATGTTTCTTGAAGAACGGCGAAATAAGATTCTGGAATATCTGGATAAATATGATCGTGCCAGTATGAAATATCTAGCACA
CCTTTTTGACGTTACTAAAGAAACCATACGCAGTGATTTAAATGTGTTAGCTAGCCGGAATTTAATTCAACGTTGCCATG
GCGGCGCTATGGTTATACGACGGCACTTGCAATCAGAACTAATTACTGAAACCGGGAAAGATTTTGAAGTTTTATTAAAA
AGCATAAAAAAACCGGAAAGAAATATTGCCATAAAAAATAAAGGAAATACGATGAATGGTAAAGTTTGTATTCTTGGTTC
TTTTAATGTGGATATCATTGCCAGAGTCGAACGATTCCCAAAAGGAGGGGAATCGCTATTGGCTCAGGGAAGCGCATTAG
GACCGGGAGGTAAAGGCGCTAATCAAGCGATGGCCGCCAGTCGTGCTGGTGCAAAAGTGCATTTCGTCTCAAAAGTAGGA
AAAGATCAATTCAGTCATTTTGCTTATGAACATCTTTCCAAATCGGAAATACATTCCTTTAAACTTTATCAGTCTGATAC
CGAGCCCACAGGAAACGCCATTATTTATGTTTCCCAACAGAATGGCGAAAATATGATTACCATCTATCCCGGCGCAAATA
AAACCATTACCGACGAAGAAATTGCAGAGATCATGCCTGAACTTGAAAACTCAGACGTATTGCTACTGCAACTGGAAAAT
AATTTTTCATCCCTATTAAGGGTCATGAAATTAGCCAAAGCGCTAAATACAAAAATCATTCTCAATCCGGCACCTTATTC
AAGTGATGTACTTTCCTGTCTGGATTATGTTGATGTCATCACGCCTAATGAAACAGAAGCGTCGTTACTCTCCAACATTG
AAGTCAACGATTTAAGCAGTGCCATAAGTGCCATTACTTCTCGCAAAATCCCCATCGTGCTGGGAGCGGCCCTGGCTGCC
TGTTTTGTCGCACCAATCCCGTTTGTGCACAACAACACGTTCACCATTTTACTGCTCTCTCTAGGGTATTTTTGCTCTCA
ACTGCCCTCTGGCGTAATTTGGACACTGGCAACCGATATCGCGCCCAAAGACCAGGAGGCATCGTTAGGAGCGATTCAGA
ATTTTGGTGGTTTCCTGGGGGCGGCCAGTGCGCCGATCATCACCGGTATCATTCTTGATACCACCGGTATGTTTACCGAC
GTCTTTTTCCTCGGCGCGGGACTACTCATGCTGGGGGCATTAAACTACGGTTTGTTTGTCAGAAAACCGATTCAGGAATA
A

Protein sequence :
MFLEERRNKILEYLDKYDRASMKYLAHLFDVTKETIRSDLNVLASRNLIQRCHGGAMVIRRHLQSELITETGKDFEVLLK
SIKKPERNIAIKNKGNTMNGKVCILGSFNVDIIARVERFPKGGESLLAQGSALGPGGKGANQAMAASRAGAKVHFVSKVG
KDQFSHFAYEHLSKSEIHSFKLYQSDTEPTGNAIIYVSQQNGENMITIYPGANKTITDEEIAEIMPELENSDVLLLQLEN
NFSSLLRVMKLAKALNTKIILNPAPYSSDVLSCLDYVDVITPNETEASLLSNIEVNDLSSAISAITSRKIPIVLGAALAA
CFVAPIPFVHNNTFTILLLSLGYFCSQLPSGVIWTLATDIAPKDQEASLGAIQNFGGFLGAASAPIITGIILDTTGMFTD
VFFLGAGLLMLGALNYGLFVRKPIQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 4e-54 47
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 3e-54 47
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 3e-54 47
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 9e-51 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_0840 YP_008521222.1 Ribokinase VFG0483 Protein 2e-54 47