Gene Information

Name : Ser39006_3759 (Ser39006_3759)
Accession : YP_008524141.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4213821 - 4216394 bp
Length : 2574 bp
Strand : -
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein, AAA ATPase central domain protein, Clp ATPase domain-containing protein, Clp domain protein; KEGG: ATP-dependent chaperone ClpB; SMART: Clp ATPase domain-containing protein, AAA ATP

DNA sequence :
ATGCGTCTGGATCGTCTTACCAATAAATTCCAGCTTGCCCTCGCCGATGCTCAATCTCTCGCACTTGGGCGGGATCATCA
ATTTATTGAACCACTTCATCTGATGAGTGCTCTCCTGAACCAGGAAGGTGGCACGGTTAGCCCTTTGTTAACGGCGGCGG
GCGCAAATGTTGTTAATCTTAAAAGTGCCATTGAACAGGCATTAGGTCGCTTACCACAGGTAGAAGGGACTGGTGGCGAT
GTTCAGCCATCCAATGAACTGGTAAAAACTTTAAATATCTGCGACAAGCTGGCCCAAAAACGGGGCGATACATTTATTTC
TTCAGAACTGTTTGTCTTGGCTGTTTTAGAGTCCCGAAGCACATTCAGTGATGTGCTAAAGAACGCTGGCGCTACCGAGG
AAAACGTGACTAAAGCGATCGAACAGATTCGGGGAGGAGAACAGGTGAATGAGCAGGGAGCAGAAGATCAGCGGCAGGCT
TTAAAAAAATACACTATTGATTTAACCGAGCGTGCCGAGCAAGGCAAGTTGGACCCCGTTATTGGCCGGGATGAAGAAAT
TCGCCGTACTATCCAGGTATTACAGCGCAGAACAAAAAACAACCCGGTACTCATTGGTGAGCCTGGCGTAGGTAAAACCG
CAATTGTTGAAGGGCTTGCACAGCGTATTGTCAATGGGGAAATTCCTGAAGGATTAAAGAATAAACGCGTTTTATCGTTA
GATATGGGCGCGCTGATTGCAGGAGCCAAATACCGTGGTGAGTTTGAAGAGCGCCTGAAAGGTGTACTAACCGACCTCTC
GAAGCAGGAAGGCAATGTCATCTTGTTCATTGATGAACTACATACCATGGTCGGTGCTGGCAAGGCTGATGGTGCGATGG
ATGCAGGTAATATGCTGAAACCTGCGCTTGCTCGCGGTGAATTGCATTGTGTCGGCGCAACCACGCTGGATGAATACCGT
CAGTATATCGAAAAAGATGCCGCGCTTGAGAGACGTTTCCAAAAGGTGTTTGTCGCTGAGCCAAGCGTGGAAGATACCAT
CGCGATTCTACGTGGTCTGAAAGAACGTTATGAGTTACATCACCATGTACAGATTACCGATCCGGCGATAGTCGCTGCTG
CTATGTTATCTCATCGTTATATTGCCGATCGTAAATTACCAGATAAGGCTATCGATCTGATCGATGAAGCGGCATCAAGC
ATTCGTATGCAAATCGACTCTAAACCAGAACCGCTGGATAGATTGGATCGCCGTATTATCCAGTTGAAGCTGGAACAGCA
GGCGTTGAAGAAAGAGTCTGATGAAGCCAGCCTGAAACGCCTGGAGCTGTTAAGTACTGAACTGGAGCAAAAAGAGCGTG
AATACTCGAAGCTAGAGGAAGAGTGGAAGGCGGAAAAAGCTTCTCTGACGGGGACTCAGAATATTAAAGCTGCGTTGGAA
CAAGCGAAAATCACTTTGGAACAAGCGCGTCGTCAGGGTGATCTGGGACGTATGTCAGAACTGCAATACGGCAAGATCCC
CGAATTGGAAAAACAGCTTGCTGCAGCGACCCTGGTAGAAGGCAAGACAATGCATCTACTGCGTAACCGGGTTACAGATG
TGGAAATCGCCGAAGTACTGGCGCGGTCGACCGGTATTCCTGTCTCCAGAATGCTGGAGGGCGAACGTGAAAAACTGTTA
CGTATGGAGCATGCGTTACATCAGCGTGTGATTGGCCAGGATGAAGCGGTTGAGGCAGTCGCCAACTCTATTCGGCGTAG
CCGTGCCGGACTCTCTGATCCAAATCGTCCCATTGGGTCATTTCTATTCCTGGGACCAACTGGTGTCGGTAAGACTGAAC
TTTGCAAGTCACTGGCTTCATTCCTGTTTGACAGTGACGATGCCATGGTTCGTATTGATATGTCTGAATTTATGGAGAAA
CATTCTGTATCGCGTCTGGTTGGCGCCCCTCCGGGATATGTTGGGTATGAAGAGGGGGGGTATCTGACGGAAGCCGTGCG
CCGTCGTCCTTACTCGGTGATTTTGCTGGATGAGGTGGAAAAAGCACATCCGGATGTATTCAATATTTTGTTGCAGGTAT
TGGATGATGGGCGTCTTACTGATGGTCAGGGGCGGACAGTCGATTTTCGTAATACGGTTGTTATCATGACGTCTAATCTG
GGGTCAGATTTAATTCAGGAACGCTTCGGCGACATGAATTACACCCAGATGCGTGACATGGTGCTAGAGGTTGTTAGTCA
TCACTTCCGTCCTGAATTTATCAACCGAATTGATGAAGTTGTGGTATTCCATCCCTTGGGGCGTGCACATATTGCTTCTA
TTGCCCAGATTCAACTTCAACGTTTGTACCAGCGTTTGGAAGAGCGAGGTTACAGCGTGACGATTACCGAACCTGCGTTG
GCGCTACTTGGAGAGTTGGGGTTTGATCCGGTTTATGGGGCCCGACCGCTTAAACGAGCTATCCAACAGTTAATTGAGAA
CCAACTGGCCCAGCAGATTCTGTCCGGCAAGTTAATTCCCGGTAAACTCGTGACGTTAGATGTTGAGGGAGATACGATCG
TCGCGCATCAATAG

Protein sequence :
MRLDRLTNKFQLALADAQSLALGRDHQFIEPLHLMSALLNQEGGTVSPLLTAAGANVVNLKSAIEQALGRLPQVEGTGGD
VQPSNELVKTLNICDKLAQKRGDTFISSELFVLAVLESRSTFSDVLKNAGATEENVTKAIEQIRGGEQVNEQGAEDQRQA
LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEIPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKGVLTDLSKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAMLSHRYIADRKLPDKAIDLIDEAASS
IRMQIDSKPEPLDRLDRRIIQLKLEQQALKKESDEASLKRLELLSTELEQKEREYSKLEEEWKAEKASLTGTQNIKAALE
QAKITLEQARRQGDLGRMSELQYGKIPELEKQLAAATLVEGKTMHLLRNRVTDVEIAEVLARSTGIPVSRMLEGEREKLL
RMEHALHQRVIGQDEAVEAVANSIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKSLASFLFDSDDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQERFGDMNYTQMRDMVLEVVSHHFRPEFINRIDEVVVFHPLGRAHIASIAQIQLQRLYQRLEERGYSVTITEPAL
ALLGELGFDPVYGARPLKRAIQQLIENQLAQQILSGKLIPGKLVTLDVEGDTIVAHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-101 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_3759 YP_008524141.1 ATP-dependent chaperone ClpB VFG0079 Protein 1e-122 41
Ser39006_3759 YP_008524141.1 ATP-dependent chaperone ClpB VFG2084 Protein 1e-101 41