Gene Information

Name : Ser39006_3757 (Ser39006_3757)
Accession : YP_008524139.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Unknown
Product : IstB domain protein ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4206141 - 4206929 bp
Length : 789 bp
Strand : +
Note : KEGG: transposase/IS protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase

DNA sequence :
ATGAGCCTTCAGCATCAACGTATTAGCGAGCTCTGTGCCGACTTCAAGCTTGAACGTATTGCCAGTGAGTGGCCCGCGCT
CGCACAAAAAACACTGGATGATACCGGGCCATTCGGCGACTTTTTGGAACAGCTTCTGCAACTGGAGACGAACAGCCGTA
ACGAACGTCGCCAGCAGACGCTTTTGCGGTTATCAGGACTGCCAGCGGTTAAGACCCTGGAGCAGTTCGACTTCAAGTTC
GCCAGCGGCACACCACGAGCTCAGCTTCAGGAACTCGCCGGGCTGGCATTTATAGAACGGCACGAGAACATTGTCTTACT
GGGTCCCTCGGGCGTAGGAAAGAGCCATCTGGCTTGTGCGTTGGCACATAAAGTGGCGATGTCAGGCCAAAGTGTTCGCT
TTATAACGGCAGCAGATATGATGTTGCAGTTGGTCGCCGCTCACCGACAGGGTGATCTCAAGGGATATTTAGGACGGTGC
GTCAACAAGCCGCGACTGCTTGTAATTGATGAGGTCGGGTATCTGCCGTTCGGTAAGGAAGAGGCTAATTTGTTCTTTCA
GGTTGTCGCCCGGCGCTATGAGACCGGAAGTCTGATCCTCACGAGTAATCTGCCGTTTACTCAGTGGTCAGGTACGTTTG
GTGATGATGAAACGCTGACGGCAGCAATGTTAGATCGACTGCTTCACCATGCACATATCGTCCAGATAAGTGGTCAAAGT
TATCGCCTGAAAGACAAACTGAAAAGTGGTCAGTTAAAGAAATCGAAGATAACTGAACTACAGGAATAA

Protein sequence :
MSLQHQRISELCADFKLERIASEWPALAQKTLDDTGPFGDFLEQLLQLETNSRNERRQQTLLRLSGLPAVKTLEQFDFKF
ASGTPRAQLQELAGLAFIERHENIVLLGPSGVGKSHLACALAHKVAMSGQSVRFITAADMMLQLVAAHRQGDLKGYLGRC
VNKPRLLVIDEVGYLPFGKEEANLFFQVVARRYETGSLILTSNLPFTQWSGTFGDDETLTAAMLDRLLHHAHIVQISGQS
YRLKDKLKSGQLKKSKITELQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 2e-58 61
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-72 58
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-72 56
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-72 56
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-72 56
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-72 56
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-72 56
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-72 56
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-72 56
unnamed CAA21402.1 - Not tested HPI Protein 2e-72 56
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 4e-72 56
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 3e-72 56
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 3e-72 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_3757 YP_008524139.1 IstB domain protein ATP-binding protein VFG1460 Protein 1e-58 61
Ser39006_3757 YP_008524139.1 IstB domain protein ATP-binding protein VFG1663 Protein 7e-73 58
Ser39006_3757 YP_008524139.1 IstB domain protein ATP-binding protein VFG1606 Protein 1e-72 56
Ser39006_3757 YP_008524139.1 IstB domain protein ATP-binding protein VFG1515 Protein 1e-72 56
Ser39006_3757 YP_008524139.1 IstB domain protein ATP-binding protein VFG1627 Protein 1e-72 56