Gene Information

Name : Ser39006_3432 (Ser39006_3432)
Accession : YP_008523814.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3856156 - 3857406 bp
Length : 1251 bp
Strand : +
Note : PFAM: integrase family protein, Domain of unknown function DUF4102; KEGG: phage integrase family protein

DNA sequence : 
ATGGCGCTAACTGATCTAAAAGTTAAATCTGCAAAACCTTCCAGTAAGCCAATCAAGCTCACTGACGGGTTTGGTATGCA
TCTACTTGTCCACACAAATGGTTCAAAGTATTGGCGCTTTCAATACCGTTTCGCTGGTAAACAAAAGATGCTGGCGCTTG
GTGTCTATCCTTCCGTCTCCCTAGCTGAAGCAAGGGAAAGACGTGATAACGCCAGAAAACTGATTGCTAATGGCATTGAT
CCCAGCGAAAAGAAAAAAGCGGATAAAATTGAAGAGAGTGGCGCTTTAACTTTTGAAACGGTAGCAAGAAGCTGGCATTC
CAGCAATAAAACATGGTCAGAAGGCCACCGCACACTGATACTCAACAGCCTAACCACTCATGTTTTTCCGATCATCGGTC
AAAGAAATGTTACTGACCTGAAAACTCGTGATTTATTGGTTCCTGTAAAAAAAGCGGAACAAACCGGGCATCTGGAACTG
GCCTCACGACTTCAACAACGTATCACCGCCATTATGCGTTATGCAGTACATAATGCCCTTATTGAGCATAACCCGGCTTA
TGATCTGGCGGGAGCAATAGCAACAGTCAAAAGTGTTCATCGTCCAGCACTTTCCCTTGAACGTATTGCTGAATTGATGG
AACGTATAGAGGCATATAAAGGTAAAGGACTTACCCAATTGGCTGTTCGATTGTGTTTGTTGACCTTTATTCGTTCCAGC
GAGTTACGATTTGCGCGTTGGTCAGAGTTTGATTTCAAAAATGCGCTCTGGACGATTCCTGCAGAACGAGAACCCCTTAA
AAACATCAAGTTCTCTCATCGCGGATCTAAGATGAAGAGTCCCCATCTGGTGCCGCTGAGCAAGCAGAGTCTCGCCATTC
TGAAAGAAATCAAAGCCATCAGTGGCGCTCATAAATTTGTATTCACAGGTTTCAGCTATGCCGACAAGCCTATCAGTGAA
AACACGATTAATAAGGCATTACGTGCTATGGGTTATAACACCCAAAAAGACGTTTGTTGCCACGGATTCCGCACAATGGC
CTGTAGCGCTCTGATTGAATCAGGATTATGGTCAAGAGATGCCGTTGAACGACAGATGAGTCACCAAGAACGTAGCTCTG
TTCGAGCCGCATACATCCATAAGGCTGAACATCTGGATGAACGCCGCCTAATGCTCCAGTGGTGGGCTAATTTCCTTGAT
GCCAACAGCAACTGTATGATCAGGCCGTTTGAATTTGCTAAAAAATTATAG

Protein sequence : 
MALTDLKVKSAKPSSKPIKLTDGFGMHLLVHTNGSKYWRFQYRFAGKQKMLALGVYPSVSLAEARERRDNARKLIANGID
PSEKKKADKIEESGALTFETVARSWHSSNKTWSEGHRTLILNSLTTHVFPIIGQRNVTDLKTRDLLVPVKKAEQTGHLEL
ASRLQQRITAIMRYAVHNALIEHNPAYDLAGAIATVKSVHRPALSLERIAELMERIEAYKGKGLTQLAVRLCLLTFIRSS
ELRFARWSEFDFKNALWTIPAEREPLKNIKFSHRGSKMKSPHLVPLSKQSLAILKEIKAISGAHKFVFTGFSYADKPISE
NTINKALRAMGYNTQKDVCCHGFRTMACSALIESGLWSRDAVERQMSHQERSSVRAAYIHKAEHLDERRLMLQWWANFLD
ANSNCMIRPFEFAKKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-139 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-139 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-139 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-139 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-139 67
int CAC81896.1 integrase Not tested LEE II Protein 2e-131 67
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-137 66
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-136 66
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-139 66
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-137 66
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-138 66
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-139 66
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-138 66
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-139 66
int AAK00456.1 Int Not tested SHI-1 Protein 8e-131 66
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-132 66
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-139 66
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-140 66
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-140 66
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-138 66
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-138 66
int AAL51003.1 CP4-like integrase Not tested LEE Protein 8e-139 66
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-120 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-120 59
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-115 55
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 8e-77 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 5e-113 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 5e-113 54
int YP_002346908.1 integrase Not tested HPI Protein 3e-105 52
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-105 52
int2 NP_993013.1 integrase Not tested HPI Protein 3e-105 52
int CAA08754.1 integrase Not tested HPI Protein 6e-106 52
int CAA21384.1 - Not tested HPI Protein 3e-105 52
int CAB59974.1 integrase Not tested HPI Protein 4e-106 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 7e-89 52
unnamed AAD17660.1 unknown Not tested HPI Protein 6e-103 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-97 49
int CAC39282.1 integrase Not tested LPA Protein 5e-81 44
int AAD44730.1 Int Not tested SHI-2 Protein 2e-80 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-81 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 5e-79 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-79 43
int ACU09430.1 integrase Not tested LEE Protein 4e-79 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 5e-79 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-79 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-78 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-78 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_3432 YP_008523814.1 integrase family protein VFG0626 Protein 7e-139 66
Ser39006_3432 YP_008523814.1 integrase family protein VFG1693 Protein 7e-138 66
Ser39006_3432 YP_008523814.1 integrase family protein VFG1536 Protein 1e-132 66
Ser39006_3432 YP_008523814.1 integrase family protein VFG0783 Protein 2e-79 43
Ser39006_3432 YP_008523814.1 integrase family protein VFG0598 Protein 5e-79 43