Gene Information

Name : Ser39006_3298 (Ser39006_3298)
Accession : YP_008523680.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : ABC-type transporter, integral membrane subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3677494 - 3678537 bp
Length : 1044 bp
Strand : +
Note : PFAM: ABC-type transporter, integral membrane subunit; KEGG: transporter permease

DNA sequence :
ATGCCACTTCATCAGACGCATCATGACGCTGTCGCGATGCCCCCCCGTTCATATTGTCGTGTTCATACACGACGCCAATA
CGGCGTAGGGATGTGTTTACTGATTATTGTCGTTGTGGTGGCCGCCAGCCTGATACTGGGTGCCAAATCCATTCCACTGG
ATGTGGTCTGGTCAAGTCTGACGGGTCAGATAACCAACGCAGACAGCACGATTATTCTTGCTGCTCGGCTACCTCGCACT
CTTGCCGGTATTATCGTCGGGATAGCGCTGGGCGGCGCTGGCGCCGTGATTCAGGCGCTGACCCGCAACCCGCTGGCCGA
TCCCGGTATCCTCGGTGTGAATGCCGGGGCGAGTTTTGCCATTGTGATCGGTATTACCGTGTTTGGCATTAACAGCATGG
GGTCATGGCTGGGTTTTGCCTGGGCAGGCGTGTTTGTCACCAGTCTGATGGTGTGGGTTATCGGGACGCTGAGTGGAGGT
CGTGTCAACCCGGTACGTTTGACACTGGCCGGCGTGGCGCTAAGTGCCGTATTGATGGGCATTACATCATCTATTTCTCT
GCTCAATCCCGAAGCGTTTGATCAACTCCGCTTATGGGAGGCTGGCACGCTGGATATCCGCTCCATGCACAACATCGCGC
TGGTCACTCCCGCCATTTTGCTCGGCAGCATACTGGCACTGATAGCGGCCCGGTCACTAAACACCCTCGGCATGGGTGAA
GATCTCGCCGCCTCATTAGGCACCCGAGTGATTCTGGTGCGGCTGGTTTCCATCATCGCCATCATGTTGCTGTGTGGTTC
AGCCACGGCGTTGGTCGGCCCTATCGGATTTGTCGGGCTGATGATTCCCCATATCGCACGCTGGTGGGCTGGGCCGGATC
AGCGCTGGATCCTGCTCTACTCATTCCTGTTCGCCCCTATCCTGCTGCTGAGCGCCGATATTGTTGGTCGCCTGTTGGTG
CCGGGGGAGCTGCGGGTTTCAATCATTACTGCCTTTATTGGTGCCCCCGTGCTGATCTGGCTGGTACGGCGGCGTAAAGC
CTGA

Protein sequence :
MPLHQTHHDAVAMPPRSYCRVHTRRQYGVGMCLLIIVVVVAASLILGAKSIPLDVVWSSLTGQITNADSTIILAARLPRT
LAGIIVGIALGGAGAVIQALTRNPLADPGILGVNAGASFAIVIGITVFGINSMGSWLGFAWAGVFVTSLMVWVIGTLSGG
RVNPVRLTLAGVALSAVLMGITSSISLLNPEAFDQLRLWEAGTLDIRSMHNIALVTPAILLGSILALIAARSLNTLGMGE
DLAASLGTRVILVRLVSIIAIMLLCGSATALVGPIGFVGLMIPHIARWWAGPDQRWILLYSFLFAPILLLSADIVGRLLV
PGELRVSIITAFIGAPVLIWLVRRRKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 2e-38 45
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 2e-38 45
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 2e-38 45
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 2e-38 45
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-34 41
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_3298 YP_008523680.1 ABC-type transporter, integral membrane subunit VFG0926 Protein 2e-66 59