Gene Information

Name : Ser39006_2978 (Ser39006_2978)
Accession : YP_008523360.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : thiol peroxidase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3286331 - 3286834 bp
Length : 504 bp
Strand : +
Note : KEGG: redoxin domain-containing protein; HAMAP : thiol peroxidase; PFAM: Redoxin domain protein

DNA sequence : 
ATGTCACAGACCATACATTTTCAAGGCAATCCAGTACCCGTAGCCGGGGTCTTTCCCAAAGTGGGTAGCAAAGCCGGCGC
GTTCTCATTGGTTGCCAAAGATCTCTCTGACGTTGCTCTCAGCCAGTACGCAGGCAAACGTAAAATTCTGAACATATTCC
CCAGCATCGATACCGGCGTTTGCGCAACATCCGTGCGGAAATTCAACCAATTGGGCTCCGAGCTGGAAAACACCGTTGTG
TTGTGTATTTCTGCTGATCTGCCATTCGCCCAGTCACGCTTTTGTGGTTCAGAAGGGCTGAATAACGTAGTGGTGCTTTC
TACATTGCGTGGCGCTGAATTCAAAGAAAACTATGGTGTCGCCATTGTTGATGGTCCATTGAAAGGCCTGACTGCTCGTG
CGGTTGTGGTACTGGATGAAAACGATATCGTATTGCACAGCGAGTTGGTGAACGAAATCACCACCGAACCGAATTATGAT
GCCGCACTGGCAGTACTGAAATAA

Protein sequence : 
MSQTIHFQGNPVPVAGVFPKVGSKAGAFSLVAKDLSDVALSQYAGKRKILNIFPSIDTGVCATSVRKFNQLGSELENTVV
LCISADLPFAQSRFCGSEGLNNVVVLSTLRGAEFKENYGVAIVDGPLKGLTARAVVVLDENDIVLHSELVNEITTEPNYD
AALAVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 3e-37 49
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 4e-37 49
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 2e-37 49
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 6e-37 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_2978 YP_008523360.1 thiol peroxidase VFG0087 Protein 9e-38 49