Gene Information

Name : Ser39006_2919 (Ser39006_2919)
Accession : YP_008523301.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3215185 - 3215838 bp
Length : 654 bp
Strand : +
Note : KEGG: hrcR, type III secretion inner membrane protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGATCTCCGGTCAGTTCGATCCAGTGATGCTTGCCCTGTTCCTCGGCGCGCTTTCACTGATTCCGATGATGATGATCGT
CTGTACCTGCTTTCTTAAAATCGCCATGGTGTTGATCATTACCCGTAATGCCATTGGCGTGCAGCAAGTGCCCCCCAATA
TGGCGCTGTATGGTATCGCTCTGGCGTCCACACTGTTTATCATGGCGCCGGTATTCAACGATATCCGGCAACAATTTCAG
GACACGCCGCTGGATTTAAACAGCATTGAAACACTGGAAACGACGCTCGGCAGCGGGATCACGCCACTACAAAAATTCAT
GTCGCGCAACAGTGACCCGGACATTCTTGTCCACCTGCATGAAAACAGCATCCGCATGTGGCCGGCAAGCATGTCGGAGA
AAGTGAATACCCAAAATATCCTGTTGGTGATCCCGGCGTTTGTACTCTCGGAATTGCAGGCCGGGTTCAAAATAGGGTTT
CTGGTTTATATCCCTTTCATCGTTATTGATCTGATCGTTTCTAACGTACTGCTGGCGCTTGGGATGCAGATGGTGGCACC
CACCACCCTTTCACTGCCACTCAAGTTATTACTTTTCATATTGGTGAACGGCTGGACACGTCTGTTGGACGGTCTGTTCT
ACAGCTATTTGTGA

Protein sequence : 
MISGQFDPVMLALFLGALSLIPMMMIVCTCFLKIAMVLIITRNAIGVQQVPPNMALYGIALASTLFIMAPVFNDIRQQFQ
DTPLDLNSIETLETTLGSGITPLQKFMSRNSDPDILVHLHENSIRMWPASMSEKVNTQNILLVIPAFVLSELQAGFKIGF
LVYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFILVNGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-78 79
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-64 72
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-67 71
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-67 71
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-69 70
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-59 69
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-59 69
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-66 69
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-69 69
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-59 69
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-62 68
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-34 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-32 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-32 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-32 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-34 43
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-31 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-27 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-30 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-30 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 41
escR AAL57527.1 EscR Virulence LEE Protein 5e-32 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 7e-32 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-32 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 7e-32 41
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-32 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 7e-32 41
escR AAC31528.1 L0049 Virulence LEE Protein 5e-32 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 7e-32 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-32 41
escR AAC38369.1 EscR Virulence LEE Protein 5e-31 41
escR AAK26700.1 EscR Virulence LEE Protein 5e-32 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0044 Protein 5e-37 49
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0188 Protein 5e-36 44
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0394 Protein 1e-35 44
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG2338 Protein 1e-25 43
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0519 Protein 2e-32 43
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG1773 Protein 9e-33 41
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0715 Protein 2e-31 41
Ser39006_2919 YP_008523301.1 Yop virulence translocation R VFG0827 Protein 2e-32 41