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Name : Ser39006_2913 (Ser39006_2913) Accession : YP_008523295.1 Strain : Serratia sp. ATCC 39006 Genome accession: NC_022268 Putative virulence/resistance : Virulence Product : type III secretion protein, HrcV family Function : - COG functional category : - COG ID : - EC number : - Position : 3208730 - 3210835 bp Length : 2106 bp Strand : + Note : KEGG: hrcV, type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV); TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein DNA sequence : ATGAGCCTACTGATCTCCTGGCTTAACCGCATCGCCATTAGCGCCATGCAACGTTCCGAGATCGTTGGTGCCGTCATTGT GATGTCGATTGTTTTCATGATGATCATCCCGTTACCAACCGGACTGATTGACGTGCTGATCGCCTTAAACATCTGTATGT CTTCCCTGCTGATTGTTTTGGCGATGTATCTACCCAAACCGCTGGCATTTTCTACGTTCCCGGCGGTATTGCTACTGACC ACCATGTTTCGGCTGGCGCTCTCTATCTCTACTACTCGACAGATCTTGCTACAACAAGATGCCGGGCATGTGGTGGAGGC ATTCGGTAACTTCGTGGTGGGCGGTAATCTGACGGTAGGGCTGGTTATCTTTCTGATCCTGACCGTCGTGAATTTTATGG TGATCACCAAAGGGTCGGAGCGAGTCGCTGAAGTGGCCGCCCGTTTTACCCTCGACGCCATGCCCGGTAAGCAGATGTCG ATTGATAGCGACCTGCGTGCCGGCCTGATTGAAACCCATCAGGCCCGGCAACGCCGCGAAAATCTGGCCAAAGAGAGCCA GTTGTTCGGGGCGATGGACGGTGCCATGAAGTTCGTTAAAGGGGATGCCATCGCCAGTCTGGTGATTGTGTTCATTAACA TGCTCGGTGGTTTTGCCATTGGTGTGCTGCAAAACGGCATGACCGCCGGTGACGCGATGCATATCTACTCGGTACTGACC ATTGGCGACGGATTGATCGCCCAAATACCGGCATTGCTGATCTCACTGACCGCCGGGATGATCATCACCCGCGTTTCTGC CGATGGGCAGAAAGTAGATAACAACATTGGCCGAGAAATTGCTGAACAACTGACCAGTCAGCCCAAAGCCTGGATTATTT CTTCGATTGGCATGTTTGGTTTCGCACTGTTACCAGGGATGCCAACGATAGTGTTCGCGGTTATCAGTCTGATTTCCCTC GGCAGCGGGCTATTTCAACTGTGGCGGATCAAGCAAAGCGGGTTGCAGGCTGACAGCCTGCTCGCGGCAGATAATCTGCC CGCCGAACAGAATGGCTATCAGGATTTACGCCGTTTTAACCCAACCCGTGCTTATCTGTTGCAATTTAATCCAGTGTTCC AGCACGCGCAGGCGGCCGCATTGCTGGTACAAGAGATCCGCCGTTTGAGAAACCGACTGGTCTATCACTTTGGCTTTACC CTGCCGTCATTTGATATCGAGTTCAATCCCACGGTGCCAGAGGATGAATTCCAGTTCTGTGTGTACGAAATCCCGCTGCT ACGTGCGACCTTCGGCTCCCGGCACGTCGCGGTAGAAAAACGGCTGATACCGGAAGAGCAGCAGGACGACACCATGCATC CCGGCATTAACGCGCGTGATGAGCACCACTGGCTGTGGCTGGCTCCCGAGCATGACTTGCTGCGACAGGACCCCCTACCG CACTGGGACACCGAATCCTTGATCCTGAAACGGATGGAAAACGCCATCCATCGCAGTGGTTCACAGTTTATCGGGCTCCA GGAAACCAAATCCATTCTGGCCTGGCTGGAGGGCGAACAACCCGAACTGGCGCAGGAACTACAACGCATTATGCCGCTAT CGCGCTTTGCCAGCGTGTTGCAACGATTGGCATCAGAGCGCGTACCACTACGCTCGGTACGGCCCATCGCGGAAGCGCTG ATCGAAATCGGCCAGCATGAGCGGGATACCAACGCCCTCGCCGATTACGTTCGTCTGGAACTGAAGTCCCAGATTTGCCA CCAGTATAGTCAGGACGACAACCTGTTTGTCTGGCTGCTAACACCGGAAACCGAAGAACTGTTACGTGATGCTCTGCGCC AGACACAGAACGAGACATTCTTTGCCCTGGCGCAAGAGTATGCCGCCACGCTACTGATGCAACTGCGTCAGGCGTTTCCA CCGATGGCGCCGCTGTCTGCTGTGATTCTGGTAGCACAGGATTTACGCAGCCCGCTTAGAGCGCTGTTGCAAGATGAGTT TCATCATGTGCCGGTGCTGTCATTTACTGAGCTGGAATCACATCTGTCGATTAACGTCATCGGACGTATCGATCTGCAAG AAACAGTCGAACCTTTTAGTGCATAG Protein sequence : MSLLISWLNRIAISAMQRSEIVGAVIVMSIVFMMIIPLPTGLIDVLIALNICMSSLLIVLAMYLPKPLAFSTFPAVLLLT TMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLTVGLVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMS IDSDLRAGLIETHQARQRRENLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMLGGFAIGVLQNGMTAGDAMHIYSVLT IGDGLIAQIPALLISLTAGMIITRVSADGQKVDNNIGREIAEQLTSQPKAWIISSIGMFGFALLPGMPTIVFAVISLISL GSGLFQLWRIKQSGLQADSLLAADNLPAEQNGYQDLRRFNPTRAYLLQFNPVFQHAQAAALLVQEIRRLRNRLVYHFGFT LPSFDIEFNPTVPEDEFQFCVYEIPLLRATFGSRHVAVEKRLIPEEQQDDTMHPGINARDEHHWLWLAPEHDLLRQDPLP HWDTESLILKRMENAIHRSGSQFIGLQETKSILAWLEGEQPELAQELQRIMPLSRFASVLQRLASERVPLRSVRPIAEAL IEIGQHERDTNALADYVRLELKSQICHQYSQDDNLFVWLLTPETEELLRDALRQTQNETFFALAQEYAATLLMQLRQAFP PMAPLSAVILVAQDLRSPLRALLQDEFHHVPVLSFTELESHLSINVIGRIDLQETVEPFSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 79 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 70 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 4e-126 | 43 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 2e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ser39006_2913 | YP_008523295.1 | type III secretion protein, HrcV family | VFG0064 | Protein | 5e-130 | 44 |
| Ser39006_2913 | YP_008523295.1 | type III secretion protein, HrcV family | VFG0384 | Protein | 3e-124 | 42 |
| Ser39006_2913 | YP_008523295.1 | type III secretion protein, HrcV family | VFG0198 | Protein | 2e-114 | 42 |
