Gene Information

Name : Ser39006_2911 (Ser39006_2911)
Accession : YP_008523293.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Unknown
Product : RNA polymerase, sigma-24 subunit, ECF subfamily
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3206707 - 3207252 bp
Length : 546 bp
Strand : -
Note : KEGG: hrpL, RNA polymerase sigma-54 factor rpoN; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2, sigma-70 region 2 domain protein

DNA sequence : 
ATGGAAACCACCACACTGAAACAAATTGAGCTGTGCCAGATATATACCCCTATTAACAATGTGGACTGGGAACAGATATT
TCGACAGCACGGTAAGCGACTGCACAATTTCATTCGTAAGCGTGTGTCTAACCGTGAGGATGTAGAAGATTTACAGCAAA
TGACCTATCTGGAAGTGTTAAAAAACAGCGAGAAGTTCGCTGGTGCCTCACGTCCTGAAACCTGGGTATTTGGTATTGCT
CTCAACCTGGTGCGTAATCATTTCAAGCAGGCCCGTATCCGTGCCAATGAAGTGGGTGATGAAATACTGGAGTTTCTGTC
CAACGATATTGATCCGAGTCGTATTGTCGAATGCGACTATTCGCTGGTCAGGGCTGTTGCGGCAACGGCTCAACTGCCGG
AAGAAACCCGTAAAATGTTACTGATGCTGATTGATTCTGATGTCAGTTATCAGGATATCGCCAACATGCTGAATATCCCG
ATTGGCACTGTACGTTCGCGACTATCCCGTGCCAGGCATTTTCTCCGTCAGGCGGTAGACGCCTAA

Protein sequence : 
METTTLKQIELCQIYTPINNVDWEQIFRQHGKRLHNFIRKRVSNREDVEDLQQMTYLEVLKNSEKFAGASRPETWVFGIA
LNLVRNHFKQARIRANEVGDEILEFLSNDIDPSRIVECDYSLVRAVAATAQLPEETRKMLLMLIDSDVSYQDIANMLNIP
IGTVRSRLSRARHFLRQAVDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 3e-45 63
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 1e-29 50
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 7e-30 49
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 2e-23 46
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 9e-23 45
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 9e-23 44
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 9e-23 44
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 1e-23 42
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 1e-23 42