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Name : Ser39006_2908 (Ser39006_2908) Accession : YP_008523290.1 Strain : Serratia sp. ATCC 39006 Genome accession: NC_022268 Putative virulence/resistance : Virulence Product : sigma54 specific transcriptional regulator, Fis family Function : - COG functional category : - COG ID : - EC number : - Position : 3203114 - 3204121 bp Length : 1008 bp Strand : - Note : KEGG: hrpS, HrpS type III protein secretion system regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein, helix-turn-helix Fis-type; SMART: AAA ATPase DNA sequence : ATGAATGTCAGAAATTACAGTGAACCGAAGCCGCAGATTCACTGTTTACCCCATGAGCCTTTTTTTGAATACCCACGAGA GGATATCCACGGCACATTGTTATCCCTTATCAATGATATCGCCCCGCTAAATGTTGACATCGTCCTGGAGGGGGAAACTG GTACCGGCAAAGATACCTTGGCGCGTCGCATTCATAAGTTGTCTGGTTGTAGTGGCCCGCTGGTGGCAGTGAATTGTGCC GCCATTCCGGAAAGTCTGGCGGAAAGTGAATTGTTTGGTGTGGTTTCCGGTGCTTATACCGGCGCCAACCGTTCCCGGGC CGGTTATCTGGAAACGGCTGACAAAGGTATTCTTTTTTTGGACGAAATAGACAGTATGCCATTGACACTACAGGCAAAAA TGTTGCGTGTTTTGGAGAATCGGGGGATTGAACGTCTGGGTAGCACCCAGTTTAAAGCCGTGGATATGCGGGTTATTGTC GCCACCCAGACACCTTTGTCAAAGCTGGTGGAGGAGGGCCGCTTTCGTCGTGATCTTTATTTCCGGCTGGATACCGTCAA AATTCAGCTTCCAACGCTACGTTCGCGTATCGACATCATCCTGCCGATGTTTCAACGCTTCACTCGAGAAGCCTCTGCCC GCCTGAAACGGTCTTCTCCACCGATACCCGTTTCCGTCCATGAACGCCTGCTGACGCATAGTTGGCAAGGCAACATCCGT GAGCTTAAGGCTGCGGCAGAGCGTTGGGTGCTGGGCCTGCCGCCGTTGCCGATGGTCATGGAAACCTCAGCACAACATCA CCCCTTGCTGAAAGAGCGCTTGCGCCGCATCGAGAAATTTCTGATCCAGGACGCTCTGACGCGTAATGGTCATTGTATTG ATGATGTGGTGACAGAACTGGGCATCCCGAAAAGAACGCTCTATCACCGGATCAAACTGTTGAATGTGCGATCTGCCAAC GGTTGCACGCCATGCAGGACCATTCTGACCGGCAACGAAAAAAACTGA Protein sequence : MNVRNYSEPKPQIHCLPHEPFFEYPREDIHGTLLSLINDIAPLNVDIVLEGETGTGKDTLARRIHKLSGCSGPLVAVNCA AIPESLAESELFGVVSGAYTGANRSRAGYLETADKGILFLDEIDSMPLTLQAKMLRVLENRGIERLGSTQFKAVDMRVIV ATQTPLSKLVEEGRFRRDLYFRLDTVKIQLPTLRSRIDIILPMFQRFTREASARLKRSSPPIPVSVHERLLTHSWQGNIR ELKAAAERWVLGLPPLPMVMETSAQHHPLLKERLRRIEKFLIQDALTRNGHCIDDVVTELGIPKRTLYHRIKLLNVRSAN GCTPCRTILTGNEKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 4e-92 | 68 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 4e-89 | 65 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 4e-89 | 65 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 3e-89 | 65 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 3e-89 | 65 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 6e-74 | 57 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 6e-74 | 57 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-72 | 57 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-72 | 57 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 2e-75 | 57 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 2e-75 | 57 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 1e-75 | 57 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 9e-76 | 57 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 5e-74 | 56 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-72 | 56 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-75 | 55 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-71 | 55 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 3e-69 | 55 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 3e-69 | 55 |
