Gene Information

Name : Ser39006_1493 (Ser39006_1493)
Accession : YP_008521875.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Unknown
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1651491 - 1652129 bp
Length : 639 bp
Strand : +
Note : PFAM: Lytic transglycosylase catalytic; KEGG: transglycosylase

DNA sequence :
ATGGCAACTCGCCGCATTCTGATGTCAGCACTTCTGCTGCTACCGCTGTGCGTTTTTGCAAAGCGTGGTCAGCCGTTGCA
ACAAATCCCGCCGGTTTATCATGCCATCGCGGCAGCGGCCCGCGTGCCGGCCGAGTCGTTGTACTCCCTGGCCTTGACGG
AAAGTTCACGACGTCTTCCCTATGGTGAACGCCCGTGGCCCTGGACCATCAATGTGGCGGGCAAAGGATATCGTTTTAAG
ACCCGAGAAGCCGCCTGGCAGGCACTGCTTCAGTTTATCCGGAAATACCCGCTCAAGCGGATTGATGTGGGTATTGCTCA
GGTCAATCTGGGCTGGAACGGACATCTGTTTGCCTCGTTTTACGATGCCTTCGACCCTTATACCAACTTACGCGTCGCGG
CGAATATTCTGCGCACTTGCTATGACGCCAGTCCGGGAAGCTGGATAAAAGCGGCAGGTTGTTATCACCATCCTGCCGGC
GGCAAAGCGGCAGCGACCTATATTGCCATTGTTCGTCGCAAGCTTGACACCCTCGCACCCGCTCAGTTGGCCACATCAGG
ATCGCAGGCCCTGATGCCAACACCATTGAATGGTGTTGCACTGGTCAGTAATCAACTCACCTGGATAGAGCCAAAATGA

Protein sequence :
MATRRILMSALLLLPLCVFAKRGQPLQQIPPVYHAIAAAARVPAESLYSLALTESSRRLPYGERPWPWTINVAGKGYRFK
TREAAWQALLQFIRKYPLKRIDVGIAQVNLGWNGHLFASFYDAFDPYTNLRVAANILRTCYDASPGSWIKAAGCYHHPAG
GKAAATYIAIVRRKLDTLAPAQLATSGSQALMPTPLNGVALVSNQLTWIEPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YE3494A YP_001007653.1 hypothetical protein Not tested YAPI Protein 3e-61 70
api25 CAF28499.1 conserved hypothetical protein Not tested YAPI Protein 5e-65 67
YpsIP31758_3720 YP_001402674.1 transglycosylase Not tested YAPI Protein 7e-65 67
t4257 NP_807855.1 hypothetical protein Not tested SPI-7 Protein 2e-51 61
STY4559 NP_458645.1 hypothetical protein Not tested SPI-7 Protein 2e-51 61
PMI2591 YP_002152310.1 lytic transglycosylase Not tested Not named Protein 2e-46 58
unnamed ABR13378.1 hypothetical protein Not tested PAGI-5 Protein 8e-24 48
EXA50 ABD94659.1 conserved hypothetical protein Not tested ExoU island A Protein 2e-25 48
RL050 AAP84175.1 conserved hypothetical protein Not tested PAPI-1 Protein 2e-25 47
pph70 CAI36111.1 soluble lytic murein transglycosylase Not tested PPHGI-1 Protein 6e-26 46
ORF C67 AAN62161.1 conserved hypothetical protein Not tested PAGI-2(C) Protein 1e-22 41