Gene Information

Name : Ser39006_1483 (Ser39006_1483)
Accession : YP_008521865.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : Pilin accessory family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1642376 - 1643668 bp
Length : 1293 bp
Strand : +
Note : PFAM: Pilin accessory family protein; KEGG: pilin accessory protein PilO

DNA sequence :
ATGAGAAAACAAAAAGAACGCCGCCGAGCACAAGGTACCCAGCCTGTGCTTATCCAGGGGCGTACCGGGTGGCTGGCCGG
ATTGCGTTGGGTAGATGAAAAAGGTGCCGGGCTCGGATTCTGGCGGAATACCCGTGGTGATACCCATTGGATCCAGACCG
GCAGGAAGCCCGACCGGATGGTCGGATTTGCCCTGCCTGCCCGCGTCAGGCGTGGTATACGGCTCTGCTCCCTGGCCGCC
GCATTTTTAGTGCGTGAAGGGGGCAACAGTTACGGCATTTACCAGCTTGATGAGGCGGCGGACCGCTGGGTATTTTTAGC
CACCGTCGGGGGGCGTATCTCCGTCATGGGGGATGTGGTCGGGACATTACAGGAAGTGAACGCCGCCCGTGAGCGCTTCA
TGGAGTTCAATGACCCCGGCGATCTGCAACGTGGTTGGCATTGTAGCGCCAGACCTGAACAACCTGAGTCCTGGCAGAAC
CTGACGGGTTTTTTGACCCGCACGCAGCGGCGTCGCGTTCATCTGCGGCAAATCCCGTCGTTGCGAAAGCTGGGAACGCT
GGCGTTTTTAGTCGTGGGGGTGTCAGCCGCCCTCTTTTACTGGCGGGATGATGCCGGACTCAAGGCCCGGCAGGCGGCTG
CACTGGCTGAATACAAAGCACGTCAGGTCCTGGCGGAGCATAAACCTGCCGTTGAACCGCAGGTTGTGCATCCGTGGGCC
TCTTTGTTGCCGTCTTCCGTTTTCCTGAGCCAATGCTGGTTTACCCGTGAACCGTTGCCTGTTTCGGTAGTGGGGTGGCG
GCTTACCGCCGGCGAATGCACGCAGGCGGGCTTACGTCTGCGGTATGTGGCGATGCCCGGTACGACGGTGGAAGATTTTG
CCCGTCGGGCAAAACATATTTTTGGCCAGAGCGCGGTATTTGACCTGAAAGACGGGGGGCAGAACGGGGACGTCAATGTG
CCCTACGCCGCCACTTCGCTACCTGCCAGGGATGAAGCGGTGCCGGACGGGAATACTCAACTGATGCGTTTCGTGACCCA
TCTGCAGCGGCGCAACATCCGTGTCCGGTTTACGGAAATCAAACCACCCGACGTGATCCCCGGCGCTGCCAATACCGCAC
CGCCTCAGGGCTGGCGGGAGTTTACCTTCGCGGTGAATACCCGGCTGGCACCGGAATGGATGCTTGCTGGCTGTGATGAT
ATCGGACTTCGTCTTTTCAGCATTGCCTTCACGTTAAGCCCGCAAGGGCAGTTTGACTACACCGTTAAGGGGAGTCTGTA
TGCACAACGTTAA

Protein sequence :
MRKQKERRRAQGTQPVLIQGRTGWLAGLRWVDEKGAGLGFWRNTRGDTHWIQTGRKPDRMVGFALPARVRRGIRLCSLAA
AFLVREGGNSYGIYQLDEAADRWVFLATVGGRISVMGDVVGTLQEVNAARERFMEFNDPGDLQRGWHCSARPEQPESWQN
LTGFLTRTQRRRVHLRQIPSLRKLGTLAFLVVGVSAALFYWRDDAGLKARQAAALAEYKARQVLAEHKPAVEPQVVHPWA
SLLPSSVFLSQCWFTREPLPVSVVGWRLTAGECTQAGLRLRYVAMPGTTVEDFARRAKHIFGQSAVFDLKDGGQNGDVNV
PYAATSLPARDEAVPDGNTQLMRFVTHLQRRNIRVRFTEIKPPDVIPGAANTAPPQGWREFTFAVNTRLAPEWMLAGCDD
IGLRLFSIAFTLSPQGQFDYTVKGSLYAQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YE3503 YP_001007665.1 putative type IV pilus protein Virulence YAPI Protein 6e-85 45
YpsIP31758_3733 YP_001402687.1 pilin accessory protein PilO Virulence YAPI Protein 9e-90 45
pilO CAF28488.1 putative fimbrial protein Virulence YAPI Protein 2e-89 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_1483 YP_008521865.1 Pilin accessory family protein VFG2311 Protein 3e-85 45