Gene Information

Name : Ser39006_1478 (Ser39006_1478)
Accession : YP_008521860.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : single-strand binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1637622 - 1638164 bp
Length : 543 bp
Strand : +
Note : KEGG: single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n

DNA sequence : 
ATGTCCAGTCGCGGCGTAAATAAAGTCATTCTGGTCGGATTTTTGGGACAGGATCCTGAAATCCGCTACATACCTAATGG
AACGGCAGTGGCCAATTTTTCGCTGGCCACTGCCGAAACCTGGCGTGATAAACAAACAGGCGAAGAGAAAGAGCGAACCG
AATGGCACCGCGTAGTGATGTTCGGGAAGCTTGCTGAAATCGTCGGAGAATATCTGCGCAAAGGTTCTCAGGTTTACATC
GAGGGCCAATTGCAGACCCGTAAGTGGACAGATAACGCCGGTGTCGAACGCTGGACGACTGAAATTATGGTCAAACAGCA
AGGCACCATGCAGATGTTGGGCAGCAGTAACCGCACCAACACAAGTGGAAACGGTCAGGCTGCCGGTAAACACACTTCTG
CAGCGACACCTGGTCACAGTGGGACGCCTCAGCCAGTATCACAGTCGATGGGCAATGAACCACCGATGGACTTCGACGAC
GATATCCCGTTTCTTGGGCTCGGTTATGGCGTCTGTCGCAGCGCGATTTATGCTATTTCCTGA

Protein sequence : 
MSSRGVNKVILVGFLGQDPEIRYIPNGTAVANFSLATAETWRDKQTGEEKERTEWHRVVMFGKLAEIVGEYLRKGSQVYI
EGQLQTRKWTDNAGVERWTTEIMVKQQGTMQMLGSSNRTNTSGNGQAAGKHTSAATPGHSGTPQPVSQSMGNEPPMDFDD
DIPFLGLGYGVCRSAIYAIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 2e-52 64
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 2e-52 64
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 1e-52 64
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 2e-35 55
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 1e-30 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_1478 YP_008521860.1 single-strand binding protein VFG0576 Protein 2e-43 63