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Name : Ser39006_1476 (Ser39006_1476) Accession : YP_008521858.1 Strain : Serratia sp. ATCC 39006 Genome accession: NC_022268 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 1634403 - 1636415 bp Length : 2013 bp Strand : + Note : SMART: DNA topoisomerase I DNA-binding protein, DNA topoisomerase I ATP-binding protein, TOPRIM domain-containing protein; TIGRFAM: DNA topoisomerase III; KEGG: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein, TOPRIM domain-c DNA sequence : ATGCGCCTTTTCCTTTGTGAAAAACCCTCCCAGGGGAGAGATATTGCGGCCGTTCTCGGTGCCACTAAACGAGGAACCGG CTTTCTTCAGGGCCCCGGTGTTACTGTGACCTGGGCTGTCGGACATTTACTCGAAACCGCCTCTCCTGAGGCGTATGGCA CTCAGTTTGCACGACCCTGGAACATCCATGCTCTGCCGGTATTACCGGCACAGTGGCAAATGGTAGTGAAAAAGGAGACG GAAGATCAGTTTAAGGCCATCGCGAAATTACTTAAGCAGGTTGACGAAGTGGTGATTGCCACCGATGCCGACCGAGAAGG CGAGGTCATTGCCCGGGAATTGCTGGACTTTTGCCAGTGGCGCGGCCCGGTAAACCGGCTCTGGTTATCTGCCCTGGATG AACCGAGTATTCGCAACGGACTGAATAACATCAAACCCGGTAATGAGACGCTGGCGCTGTACTACGCGGGGTTAGGCCGT GCCCGGGCAGACTGGCTGACGGGCATGAATCTTACCCGGCTCTATACGTTGAAGGCCCGTGAAAAAGGCTTTGACGGTGT GCTGTCCGTGGGGCGGGTGCAAACACCGACGCTGGCACTGGTGGTGAATCGGGACAGAGAAATCGCCATTTTTGTCCCGA AGCCTTACTGGCAGGTCAACGCGGCTCTCCAGGCGTGTGGGATGGCGTTTGTTGCCCGCTGGGTGCCCGCGAAGATGTAC ACCGATGAGGAAAAACGCTGTGTTCATCAGGGCATTGCTCAGCAGGTGGCCCAGCTTTGCCGTCAGTCGGGTCAGGCCCA GGTCATTGAGCAGGAGAAAAAGCGGGAGACGGAGGCCGCTCCGTTGGCGTTTTCATTAGGGGCCTTGCAGCAGGCCTGCG GCAAACTGTGGGATATGTCGCCTCAGCAGGTGCTTGATACCGCCCAAAGTCTGTATGAGACCCATAAGGCCACAACCTAT CCCCGTACCGACTGTGGTTTTCTGCCGGAGTCGATGCGTGAAGAGATCCCGCTGGTTCTTGCCGCACTGGCGAAAACTGA CCCGTCCCTCACGACGACGATAGCGACTCTTGATCCCCGTTTTGTATCACGTATCTGGAACGACAAAAAAATCACGGCGC ACCACGGGATCATCCCCACTAAGCATGCCAGCGACATGGGCAACATGAATGATGTGGAGAAACGGGTGTATGAGCTTATT CGTCGGCATTATCTGGCCCAGTTCCTCCCACTGTATGAGCGAGACGTGACCCGTCTTGATCTCAGCATCGGGGGACAGCT TTTCAGAACAACCGGACAGGTTGTGGTGGTGCCTGGCTGGAAAGTGCTGTTCAGTTCGGCGACTGACAGAAAAGGTAACG CTCAGGGTGATGAGGACAATGCGCTGCCATCCCTCAACAAAGGCGATGTCTGTACTGTGACGGTGGCTGAGGTGAAGGAT CTTAAGACGAAAGCGCCGCTGTATTTTACATTTGATACGTTGATTGCCGCGATGATGAACGCAGCATCTTACGTGACCGA TTTGCAGTTGAAAAAAGTCCTGAAAGAGAATGCCGGGTTGGGGACGGAGGCTACCCGCGCCAGCATCATTGATACGCTGC TTAAGCGAGGCTACATCGTCATGAATAGACGTTATCTGCGGGCGACCGAAGTGGCGATGGATCTGATGGATGCTTTGCCA GCTCCGCTGAAAGAACCGGGCATGACGGCGCTGTGGGAACAGGCGCTGGATGAGGTGGCCGCGGGCCGCATGCGTCTTGA AGACTTTATGGCCCGGCAGACAGGTTGGACACGGCAACTGGTTGCTCAGGGACTGGCACAGAATATGGTGATCCGTTTGC CACCGACGCCAGTTTGTCCTCTCTGCGGCAGTAAAACCCGGTTGCGTCGTGGTGAGAAAAAGGCTTTTTACCGTTGTGAG AAATATCCGTCCTGCAAAGGTGTGGTTAATGTCCCTGACCAGGTGAAGAGGAAATCGGCGAAGTCTACGTCTCGAAAGCC AAAGCAGAATTAA Protein sequence : MRLFLCEKPSQGRDIAAVLGATKRGTGFLQGPGVTVTWAVGHLLETASPEAYGTQFARPWNIHALPVLPAQWQMVVKKET EDQFKAIAKLLKQVDEVVIATDADREGEVIARELLDFCQWRGPVNRLWLSALDEPSIRNGLNNIKPGNETLALYYAGLGR ARADWLTGMNLTRLYTLKAREKGFDGVLSVGRVQTPTLALVVNRDREIAIFVPKPYWQVNAALQACGMAFVARWVPAKMY TDEEKRCVHQGIAQQVAQLCRQSGQAQVIEQEKKRETEAAPLAFSLGALQQACGKLWDMSPQQVLDTAQSLYETHKATTY PRTDCGFLPESMREEIPLVLAALAKTDPSLTTTIATLDPRFVSRIWNDKKITAHHGIIPTKHASDMGNMNDVEKRVYELI RRHYLAQFLPLYERDVTRLDLSIGGQLFRTTGQVVVVPGWKVLFSSATDRKGNAQGDEDNALPSLNKGDVCTVTVAEVKD LKTKAPLYFTFDTLIAAMMNAASYVTDLQLKKVLKENAGLGTEATRASIIDTLLKRGYIVMNRRYLRATEVAMDLMDALP APLKEPGMTALWEQALDEVAAGRMRLEDFMARQTGWTRQLVAQGLAQNMVIRLPPTPVCPLCGSKTRLRRGEKKAFYRCE KYPSCKGVVNVPDQVKRKSAKSTSRKPKQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 61 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 61 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 61 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 56 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 2e-166 | 52 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 4e-178 | 51 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 2e-174 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-158 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 8e-117 | 41 |
