Gene Information

Name : Ser39006_1293 (Ser39006_1293)
Accession : YP_008521675.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Unknown
Product : protein of unknown function DUF4102
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1432726 - 1433955 bp
Length : 1230 bp
Strand : -
Note : PFAM: Domain of unknown function DUF4102, integrase family protein; KEGG: putative prophage integrase

DNA sequence : 
ATGGCAAAACTCGCTAAGAAACTGACTGACACTGAAATCAAAAATACCAAACCTACAGAGAAAGAAATCAACCTCTTCGA
TGGCGATGGTTTAATGCTACGAATCGCTCCGCTCTCAAAAGGTGGAAAAAAAAAGTGGTATTTCAGGTATCCAGTGCCAG
TAACCAAAAAGCGAACAAAAATAAGTCTCGGGACCTACCCCCACCTCACGTTAGCAAGAGCGAGAGCTTTACGTGATGAA
TACCTGTCTTTACTTGCCAATGGCATCGATCCACAAATCCATAACAGCGATAAAGCCAATGCACTAAAGGATGCTACTGA
GCACACGCTACAGGCTGTTGCAAGGAAGTGGTTAGATGAGAAGGTAAAGACAACTGGTATATCTAAAGACCACGCAGAAG
ACATCTGGCGAAGTCTGGAGCGTAATATTTTCCCCGTTATGGGCAATGTCCCTATCAAAGAGATCAGGCCTAAGATGTTG
AAACAACATCTTGACCCTATCGAACAACGTGGTGTGTTAGAAACATTACGGCGTATCATTTCACGACTAAATGAAATTTT
TCGCTATGCGGCTACTGAGGAACTCATTGAGTTCAACCCGGCTGACAACCTCGGCCAGCGTTTCAGTAAACCTAAGAAGC
AAAATATGCCAGCCTTACCCCCCAGCGAACTACCAAGATTTATGGCTGCTTTAGCTAATGCATCAATCCGTCTTGAAACC
CGTATGCTGATTGAATGGCAGTTGCTTACTTGGGTTCGCCCCGGAGAGGCTGTTCGTGCGCGTTGGGCTGACATCGATAC
AGAGAACAAAATCTGGAACATCCCCCCCGAATTTATGAAAATGAAACGTCCTCATAAGGTGCCGCTCAGCAAAGAAGCTC
TTCGTATACTCGAAAATATGCAGCCTATAAGCAGCCATCGTGAATGGATATTTCCCAGCATAAAAACTCCGCTGACCCAT
ATGCATGAGCAAACAGCCAATGCAGCGTTAATCCGTATGGGTTTAGGTGGTGAATTGGTTGCCCACGGTATGCGATCTAT
CGCAAGGACAGCAGCAGAGGAATGCGGTAAGTTCAGGACAGAAGTTCTTGAATCGGCTTTGGCTCATACCAAAAGCACTG
AGATTATAGCCGCTTACAATCGTGCAGAATATCTCGTCGAAAGGGCTGGTCTTATGCAATGGTGGGGGGATTATATTCAA
GTACAGAAACATAAGGCTATTGCTGCATGA

Protein sequence : 
MAKLAKKLTDTEIKNTKPTEKEINLFDGDGLMLRIAPLSKGGKKKWYFRYPVPVTKKRTKISLGTYPHLTLARARALRDE
YLSLLANGIDPQIHNSDKANALKDATEHTLQAVARKWLDEKVKTTGISKDHAEDIWRSLERNIFPVMGNVPIKEIRPKML
KQHLDPIEQRGVLETLRRIISRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMAALANASIRLET
RMLIEWQLLTWVRPGEAVRARWADIDTENKIWNIPPEFMKMKRPHKVPLSKEALRILENMQPISSHREWIFPSIKTPLTH
MHEQTANAALIRMGLGGELVAHGMRSIARTAAEECGKFRTEVLESALAHTKSTEIIAAYNRAEYLVERAGLMQWWGDYIQ
VQKHKAIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 2e-84 48
int AAK20803.1 integrase Not tested VPI Protein 2e-84 48
unnamed AAA82714.1 integrase Not tested VPI Protein 2e-84 48
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-84 48
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-84 48
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-80 46
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 7e-66 42
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 7e-66 42
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 7e-66 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_1293 YP_008521675.1 protein of unknown function DUF4102 VFG1092 Protein 3e-66 42