Gene Information

Name : Ser39006_1276 (Ser39006_1276)
Accession : YP_008521658.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1417376 - 1417576 bp
Length : 201 bp
Strand : +
Note : PFAM: Prophage CP4-57 regulatory; KEGG: AlpA family phage transcriptional regulator

DNA sequence :
ATGACAGCAAGAAGACTTATTCGCCTACCGGAAGTGATGAATAAAACGGGATATAGCAAAGCATGGATTTATCGACTTAT
CAGCAGGGGCGATTTCCCAGAGCCGATTAAGATTGGAATAAGAGCCAGCGCTTTTGTTGAAAGTGAAATCGATGAATGGA
TTGAAAATATTATTCAGTTATCACGTAAACATGCAGCGTAA

Protein sequence :
MTARRLIRLPEVMNKTGYSKAWIYRLISRGDFPEPIKIGIRASAFVESEIDEWIENIIQLSRKHAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 6e-08 50
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 9e-08 50
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 9e-08 50
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 5e-06 49
unnamed CAA21398.1 - Not tested HPI Protein 7e-06 49
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 4e-05 47
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 2e-07 47
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 2e-07 44
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 2e-07 44
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 6e-07 44
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 8e-06 43
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-05 43
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 2e-04 41
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 2e-04 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_1276 YP_008521658.1 phage transcriptional regulator, AlpA VFG1118 Protein 2e-08 50
Ser39006_1276 YP_008521658.1 phage transcriptional regulator, AlpA VFG1141 Protein 6e-08 44
Ser39006_1276 YP_008521658.1 phage transcriptional regulator, AlpA VFG1480 Protein 3e-06 43