Gene Information

Name : VAPA_1c54050 (VAPA_1c54050)
Accession : YP_008519130.1
Strain :
Genome accession: NC_022247
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5685002 - 5685673 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGATTCTGATTGCGGAAGACGACCAGGTGCTGGCCGATGCCCTGCTGCGCAGCCTGCGCACCTCGGGCGCGGCGGT
CGACCATGTGGCGAACGGATCGCAGGCCGACACCGCGCTCATGACGCACAGCGAGTTCGACCTGCTGATCCTCGATCTCG
GGCTGCCGAACCTGCATGGGATCGAGATCCTGAAGCGGCTGCGCGCACGCGGCTCGCAGCTGCCGGTGCTGGTGCTCACC
GCGGCCGACAGCGTGGAGGAACGCGTCAAGGGCCTGGACCACGGCGCCGACGACTACATGGCCAAGCCCTTCAGCCTGCA
GGAACTCGAGGCGCGCGTGCGCGCGCTCACGCGGCGCGGCATGGGCGCCACCAGCAACACGATCAAGCATGGCCCGCTGG
TGTACGACCAGGCCGGCCGCGTGGCCACCATCGACGGCAAGATGGTCGAGCTCTCGGCGCGCGAACTGGGCCTGCTGGAG
GTGCTGCTGCAGCGCGCGGGCCGCCTGGTCAGCAAGGACCAGCTGGTGGAGCGCCTGTGCGAATGGGGCGAGGAAGTGAG
CCTCAACGCGATCGAGGTCTACATCCACCGCCTGCGCAAGAAGATCGAGAAGGGGCCGGTGCGCATTGCAACGGTTCGCG
GCCTCGGCTACTGCCTCGAGAAGATTCCTTGA

Protein sequence : 
MRILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPNLHGIEILKRLRARGSQLPVLVLT
AADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRGMGATSNTIKHGPLVYDQAGRVATIDGKMVELSARELGLLE
VLLQRAGRLVSKDQLVERLCEWGEEVSLNAIEVYIHRLRKKIEKGPVRIATVRGLGYCLEKIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-34 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0487 Protein 9e-31 44
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0083 Protein 2e-29 44
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0638 Protein 2e-22 44
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 2e-27 42
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0197 Protein 3e-25 41
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0347 Protein 9e-28 41
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family BAC0308 Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family VFG0473 Protein 4e-32 42
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-28 41
VAPA_1c54050 YP_008519130.1 two component transcriptional regulator, winged helix family VFG1389 Protein 3e-25 41