Gene Information

Name : VAPA_1c53900 (VAPA_1c53900)
Accession : YP_008519115.1
Strain :
Genome accession: NC_022247
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5668291 - 5669595 bp
Length : 1305 bp
Strand : -
Note : -

DNA sequence : 
TTGAATAGCGCGAGCTCAGCCGAAATCAAATTGGCGATCATTGGCCTGGGGTACGTCGGCCTCCCGCTCGCCGTTGCATT
CGGTAAATTGATGCCTGTTCTCGGTTTCGATGTGGACACTCGTCGTATCGAGGATCTCCGGGTCGGCTATGACAGGACGC
TCGAAACCGAGGCCTCAGACCTCAGTGCGGCGAAACTTTTCACGCCGACCTCGGATGTTGCTGATCTTTTTGGGTGCAAT
GTCTTCATTGTTGCGGTGCCCACTCCGGTCGATAGCGCCAACCGACCCGACTTGGGCCCGCTGCTGAGCGCCAGCGAGAC
AGTTGCGAGCGTCATGCCGTCGGGTGCGATCGTCATCTACGAATCGACCGTGTATCCGGGCGCGACCGAGGAAGTTTGCG
TGCCGGTGCTTGAAAAAGTTTCGAACAAAGTCTTCAATCGCGATTTCTTCTGTGGCTACAGCCCCGAGCGCGTAAACCCG
GGGGACAAGGTCAACACGCTGACTAAGATCAGAAAAATCACGAGCGGGAGCACTCCAGAGATTGCCGACATTGTCGATCG
CCTCTACAGCCGTATCGTCACTGCGGGGACTTACAAGGCTGGCAGTCTCAAAGTTGCCGAAGCTGCAAAGGTCATCGAAA
ACACGCAGCGCGACTTGAACATTGCGCTGATGAATGAACTCTCCGTACTCTTTGAGCGGCTCGGCATCGACACCCTCGAA
GTGCTCGAAGCCGCAGGCAGCAAATGGAACTTCCTGCCATTCCGTCCAGGCTTGGTCGGCGGCCACTGCATTGGCGTAGA
TCCCTACTACCTCACATACAAAGCGGAGCAGGTCGGCTACATCCCTCAAATCATTTTGGCGGGCAGACGTATCAACGACA
ACATGGCGCGTTATGCGGCCCGCAATACCATCAAGCTGATGCTGCAGGCGGGTATGGATGTAGCGCGCTGCAAGATTGGC
GTGATGGGCATCACTTTTAAGGAAAACTGTCCCGACATTCGAAACAGCAAGGTTGTCGACTTGATACGCGAACTCCAAGC
ATGGGGCGCGCAAGTTGTCGTGGCCGATCCGTGGGCCAACGCAGAGGAGGTGCAAGCTGAATACAGCTTGAAACTCGATG
TCATCGACGAGCACAACCCCGTCGATGCCTTGGTGGTTGCGGTGGGGCACGCTGAATATCGGGAGCTTTCGCCCCAGCTC
TTGCGCCGCTATTGTCGGCACGATGCACCGGTACTGACCGACGTCAAATCGCTTTATGACCGACACGAGGCCGCACGCGC
AGGCTTCATTGTGTTCAGGCTTTGA

Protein sequence : 
MNSASSAEIKLAIIGLGYVGLPLAVAFGKLMPVLGFDVDTRRIEDLRVGYDRTLETEASDLSAAKLFTPTSDVADLFGCN
VFIVAVPTPVDSANRPDLGPLLSASETVASVMPSGAIVIYESTVYPGATEEVCVPVLEKVSNKVFNRDFFCGYSPERVNP
GDKVNTLTKIRKITSGSTPEIADIVDRLYSRIVTAGTYKAGSLKVAEAAKVIENTQRDLNIALMNELSVLFERLGIDTLE
VLEAAGSKWNFLPFRPGLVGGHCIGVDPYYLTYKAEQVGYIPQIILAGRRINDNMARYAARNTIKLMLQAGMDVARCKIG
VMGITFKENCPDIRNSKVVDLIRELQAWGAQVVVADPWANAEEVQAEYSLKLDVIDEHNPVDALVVAVGHAEYRELSPQL
LRRYCRHDAPVLTDVKSLYDRHEAARAGFIVFRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-104 57
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-112 56
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-112 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c53900 YP_008519115.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 1e-112 56