Gene Information

Name : VAPA_1c46740 (VAPA_1c46740)
Accession : YP_008518414.1
Strain :
Genome accession: NC_022247
Putative virulence/resistance : Unknown
Product : putative phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4919184 - 4920413 bp
Length : 1230 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGCTGACGGACACGTTTGTTAGGCAGGTGAAGCCCACCGGGAAGGCCAACGGCGACAAATATGCCGACGGCGCCGG
CATGTACCTGTTGGTGAAGACTGCCGGGAAATACTGGCGAATGGATTACACCTTCGCCGGCAAGCGGAAGACGCTGGCGC
TGGGAACCTACCCGGAGGTCTCGCTGGCCAAGGCTCGGGATCGCCGCGCCGCCGCCCGCGAGCTGCTGGCAGACGGGACC
GACCCGAGCGCGGCCAAGCGCGAAAAAAAGAGAGCCCTGGCCGACGCGGCGGCGAATACGTTCGAGACGGTTGCGCGCGA
GTGGCTGGGAAAGACCGCGGCCAAACGAGCGAGCGGAACGCAGCTCAAGGTCAAGACATGGCTCGAGAAGGACGTGCTCC
CCTTCATCGGCAAGATGCCCATGTCCACCATCGGTCCGCGCGACATTCTGGAGCGAGTGGTCCGCAAGCTGGAAGCACGC
GGCGCTATCGATACCGCCCATCGCGTCAAGCAGCTTTGCGGGCAGGTGTTTCGCTTCGCAGTGGTGTCAGGGCTGGCAGA
GCGGGACGTGACCGCCGATCTGAGCGAAGCTCTGGCCTCGAAAGCGACCAAGCACTTCGCCGCCATTACCGAGCCCAAGC
GAGTCGGAGACCTGATGCGCTCGATCCATGCCTACAGCGGCCACCCCACGACCGTTGCCGCGCTGAAGCTTTCCCCGCTG
CTGTTTGTCCGGCCTGGCGAGTTGCGCACCGCGGAATGGGCCGAGATCGACCTGGACGCGGCCGAGTGGCGCATCGCCGG
CCCGAAGATGAAAATGAAGGTCGACCACGTCGTGCCGCTGGCCACCCAGGCGGTGGAGATCCTGCGCAACCTCCACCCGA
TCACGGGGCATGGACGGTTCGTGTTTCCCAGCATACGGACGGGGGAACGCCCCATGAGCGAGAACACGATCAATGCCGCC
CTGCGCGGGATGGGCTACAGCGCTGAAGTCCACACGGCCCACGGCTTCAGGGCAACCGCGCGGACCATCATGGATGAGGT
GCTTGGCGAGCGCGTGGACTTCATCGAGCACCAGCTCTCCCACGTGGTCAGGGATACCAACGGTCGTGCGTACAACCGCA
CCGCACATCTCCCCGCGCGCCGGGAAATGATGCAGCGCTGGGCGGACTACCTGGACAAGCTGCGCATCGGTGCCGACGTG
ACTCCCTTGAAGCCGCGCCAGATGACATAG

Protein sequence : 
MALTDTFVRQVKPTGKANGDKYADGAGMYLLVKTAGKYWRMDYTFAGKRKTLALGTYPEVSLAKARDRRAAARELLADGT
DPSAAKREKKRALADAAANTFETVAREWLGKTAAKRASGTQLKVKTWLEKDVLPFIGKMPMSTIGPRDILERVVRKLEAR
GAIDTAHRVKQLCGQVFRFAVVSGLAERDVTADLSEALASKATKHFAAITEPKRVGDLMRSIHAYSGHPTTVAALKLSPL
LFVRPGELRTAEWAEIDLDAAEWRIAGPKMKMKVDHVVPLATQAVEILRNLHPITGHGRFVFPSIRTGERPMSENTINAA
LRGMGYSAEVHTAHGFRATARTIMDEVLGERVDFIEHQLSHVVRDTNGRAYNRTAHLPARREMMQRWADYLDKLRIGADV
TPLKPRQMT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-66 43
int ACU09430.1 integrase Not tested LEE Protein 2e-66 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-66 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-66 43
int AAD44730.1 Int Not tested SHI-2 Protein 1e-65 43
int CAC39282.1 integrase Not tested LPA Protein 6e-66 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-66 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-64 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-63 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-63 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-65 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c46740 YP_008518414.1 putative phage integrase VFG0783 Protein 1e-66 43
VAPA_1c46740 YP_008518414.1 putative phage integrase VFG0598 Protein 5e-64 42