Gene Information

Name : czcR (VAPA_1c36750)
Accession : YP_008517430.1
Strain :
Genome accession: NC_022247
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CzcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3886451 - 3887128 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTCTGGTCATTGAAGACGAACCCAAGCTTGGCGACTACCTGAAGAAGGGCCTGGAGGAGAACGGGTATGTGGT
CGACATTGCGCGCGACGGCATCGAAGGCCGCTACCTCGCCACCGAGGGCGACTACGCGCTGATCCTGCTCGATGTGATGC
TTCCCGGCATCGACGGATTCGCGGTGCTGCAGGCGATCCGGCGCACCAGCAACGTGCCCGTGCTGGTGCTCACCGCCCGC
GACAAGGTCGAGGATCGGGTCAACGGCCTGCAGCAAGGCGCCGACGACTACCTCGTCAAGCCCTTTTCCTTTTCCGAGCT
GCTGGCGCGCATCCAGGCGCTGCTGCGCCGCGGCAAGCCCCAGGAGTCCGCCGTGCTCCGGCTGGCCGACCTGGAGCTCG
ACCTGGCCAGCCGCAAGTGCTTTCGCAACCGCACGCGGCTGGACCTCACGGCGAAGGAGTTCACGCTGCTGGTGGTGCTG
CTGCGCCGCCGCGGGCAGATACTCTCGCGCAGCACGCTCGCCGAGCAGGTGTGGGAGATGAACTTCGACAGCGACACCAA
CGTGGTCGAGGTGGCCATCCGCAGGCTGCGCAGCAAGATCGACGATCCGTTCGACGTCAAGCTGCTGCACACGGTGCGCG
GCATGGGCTACGTGCTCGAGGATCGTTCCTGGTCGTGA

Protein sequence : 
MRILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGFAVLQAIRRTSNVPVLVLTAR
DKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGKPQESAVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVL
LRRRGQILSRSTLAEQVWEMNFDSDTNVVEVAIRRLRSKIDDPFDVKLLHTVRGMGYVLEDRSWS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-53 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-52 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0125 Protein 3e-67 63
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0197 Protein 3e-66 63
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0638 Protein 7e-55 61
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0083 Protein 6e-59 58
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0111 Protein 5e-59 55
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0308 Protein 8e-56 54
czcR YP_008517430.1 transcriptional activator protein CzcR BAC0347 Protein 7e-52 50
czcR YP_008517430.1 transcriptional activator protein CzcR AE015929.1.gene1106. Protein 1e-31 42
czcR YP_008517430.1 transcriptional activator protein CzcR AE000516.2.gene3505. Protein 7e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_008517430.1 transcriptional activator protein CzcR VFG0596 Protein 9e-54 54
czcR YP_008517430.1 transcriptional activator protein CzcR VFG1389 Protein 2e-35 47
czcR YP_008517430.1 transcriptional activator protein CzcR VFG1390 Protein 3e-42 44