Gene Information

Name : VAPA_1c25240 (VAPA_1c25240)
Accession : YP_008516297.1
Strain :
Genome accession: NC_022247
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2682001 - 2682660 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGACTCCTGCTTCTCGAAGACGACGTGATGATCGGCGAGGCCGTGCTCGACCTGCTGCGCGCCGAGCAATACGCCGT
GGACTGGGTGAAAGACGGTGAGGCGGCCGAGTCCGCATTGCGCACCCAGCAATACGATCTCGTGCTGCTCGACCTGGGCG
TGCCGCGCCGCGACGGGCTCGAGGTGCTGCGCAGCCTGCGCGCCCGCAAGCAGCGCATGCCGGTGCTGATTGCCACCGCG
CGCGACTCGGTGCAGCAGCGCATCGAAGGACTCGATGCGGGGGCCGACGACTACGTGCTCAAGCCCTACGACCTCGACGA
ACTGCTGGCCCGCATCCGGGCCTTGCTGCGCCGTGCCGCGGGGCGCGCCGAGCCGGTGTACGAACACATGGGCGTGAGCA
TCAACCCGGCCACGCGCGAGGTCGCGGTGGATGGCCAGCCGGTGGTGCTTTCGGCGCGCGAGTGGGCCGTGCTCGAACCG
CTGATCGCGCGGCCCGGCATGGTGCTGTCGCGCGCCCAGCTCGAGGAAAAGCTCTACAGCTGGAAGGACGAGATCAGCAG
CAATGCGGTCGAGGTCTACGTGCACGGGCTGCGCAAGAAGCTGGGCGCAGAGTTGATCCGCAATGTGCGCGGTGTCGGCT
ACATGGTGCCGAAGACATGA

Protein sequence : 
MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRRDGLEVLRSLRARKQRMPVLIATA
RDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAAGRAEPVYEHMGVSINPATREVAVDGQPVVLSAREWAVLEP
LIARPGMVLSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAELIRNVRGVGYMVPKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-27 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c25240 YP_008516297.1 two component transcriptional regulator, winged helix family BAC0487 Protein 3e-31 42
VAPA_1c25240 YP_008516297.1 two component transcriptional regulator, winged helix family U82965.2.orf14.gene. Protein 3e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_1c25240 YP_008516297.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-23 43
VAPA_1c25240 YP_008516297.1 two component transcriptional regulator, winged helix family VFG0473 Protein 8e-31 43