Gene Information

Name : rlmH (SIR_1903)
Accession : YP_008513802.1
Strain : Streptococcus intermedius B196
Genome accession: NC_022246
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : 2.1.1.-
Position : 1993518 - 1993997 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence :
ATGAAAATAAAACTTGTAACTGTTGGAAAACTAAAAGAAAAATACCTTAAAGATGGAATTTCAGAGTATACTAAACGGCT
GAACCGCTTTACTAAGTTTGATATAATTGAACTTCCAGATGAAAAAACACCAGATAAAGCAAGCCACTTAGAAAATCAAC
AAATTCTTGATAAAGAAGGAGCTCGTATTTTATCAAAACTAGCTGATAAAGAATTTGTGATTGTTTTAGCTATTGAAGGT
CAACAATTTCCATCAGAAAAATTTAGTAAGATATTAAGTGATATAACTATTCGTGGAATCTCAGATATTACTTTTGTAAT
TGGAGGAAGCCTTGGTTTATCTACTGCTGTTAAAAAAAGAGCTAATTTATTAATGAGTTTTGGAAAATTGACTCTTCCTC
ATCAATTAATGCGATTGGTTTTAGTAGAACAAATTTATCGAGCGTTTATGATTCAACAAGGAAGTCCTTATCACAAGTAA

Protein sequence :
MKIKLVTVGKLKEKYLKDGISEYTKRLNRFTKFDIIELPDEKTPDKASHLENQQILDKEGARILSKLADKEFVIVLAIEG
QQFPSEKFSKILSDITIRGISDITFVIGGSLGLSTAVKKRANLLMSFGKLTLPHQLMRLVLVEQIYRAFMIQQGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-38 53
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-38 53
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-38 53
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-38 53
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-38 53
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-38 53
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-38 53
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-38 53
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-38 53
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-38 53
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-38 53
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-38 53
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-37 52
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-37 51
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-37 51
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-38 51
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-37 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-34 50