|
Name : VAPA_2c06230 (VAPA_2c06230) Accession : YP_008493642.1 Strain : Genome accession: NC_022234 Putative virulence/resistance : Virulence Product : type III secretion protein, HrcV family Function : - COG functional category : - COG ID : - EC number : - Position : 648626 - 650698 bp Length : 2073 bp Strand : + Note : - DNA sequence : ATGGCGAGTTCTCCGCGATCCTTCTCAACCTACCGTGGCGGCGTGCGCGACCTGCTGGGCAGCGCGGGCCGCTACAACGA CCTGCTGCTCGCGGGCCTGCTGGTGGTGATCGTCGCGCTCTTCGTGCTGCCGCTGCCGACGGCGCTGCTCGACCTGCTGA TCGCGAGCAACCTCGCCATCAGTCTGGTGCTGCTGATCGTGGCGATGTACGTGCCTTCGGCACTGTCGCTGTCGACCTTC CCGTCGCTGCTGCTGTTCACCACGCTGTTTCGCCTTGCGCTCAACATCGCATCGACGAAGCTGATCCTGCTGCATGCCCA TGCGGGCCACATCATCGACACCTTCGGCAAGCTGATCGTCGGCAACAACGTGGTGGTCGGCGGCGTCGTGTTCCTGATCA TCGCGATCGTGCAGTTCATCGTGATTGCGAAGGGTTCCGAGCGGGTGGCCGAGGTGGCGGCGCGCTTCGCGCTCGATGCG ATGCCGGGCAAGCAGATGAGCATCGACGCGGACGTGCGCGCTGGCGTGCTGTCCTCCGCGCAGGCGCAAAAGCGCCGCCA GATGCTGGAGCAGGAGTGCCAGCTCCACGGGGCGATGGATGGTGCGATGAAGTTCGTCAAGGGCGACGCCATCGCGAGCA TCGTGATCGCGCTGGTCAACATCCTCGCGGGCATCGCCATCGGAACGATGATGCACGAGATGAGCCTGGGCGGTGCGCTG CAGCGCTACGCGATCCTCACGGTGGGCGATGGCATGGTCTCGCAGATCCCATCGCTGCTGGTGTCGATCGCGGCCGGCAT CGTCATCACGCGCGTGAGCACCGGCGAGCGCCGCGACACGCAGCTGGCCAACCAGATCGGGCAGCAGCTCATGGCGCACC CGCGTGCGCTGATCATCGCGGGCCTCGCAGTCGCGAGCTTCCTGGTCGTGCCGGGCTTTCCGAAGTGGGTGTTCGGCCTG CTTGCGGCGGTGCTGCTGGGCTTGGGCTTCGCGGTGCGCATGCGGCGCCGGAAGAACCAGACCCCGGGCTGGATCTCGCA CCGCGAAGAGGCCGACCAGGAGGACAGCGACGGCGATCACGCCATTGCCGCGCCGCTGGCGGTGCGGCTGTCCAGCGGCC TGCGCGGCGGCGTCGACCGCCATGCGCTCGACCTGCATCTGGCCAGGGTGAAGACCTCGGTCGAGTCGGATCTCGGCCCG GTGTTTCCGCGCCTGCAGCTCGCGTACGCCGATGGCCTCGCCGAGCACGAGTATCAGGTGCTCGTGCACGACGTTGCAGT GACACAGGGCACGCTCAGGCCCGGGTGGCGCATGCTCGATCCGGCCGAGGCCGCCGCGCCGCCGGCCGGCGCCGAAGTGG TCGATCCCTTCGGTCCCTTTGCGCGGGTGGTCTGGGTGCCGGACGAGGCGGCCGGCTTCAAGAGCTGGAACAACGAGGAA GTGGTCGGCCTGCACCTGGACCACGCGGTGCGCCGCAATGTGCGCGAACTCATCGGCCTGCAGGAGGTGCAGCGCCTGCT GCACTCGGTGCAGCGCGATGCGCCCGAGCTCGCGGCCGAGGTGTCGCGCGTGGCTTCGGGCCAGCGCATCGCCGAGGTGC TGCGCCGGCTGCTGCAGGAAGGCATCCCGATCCGCAACCTGCACGCGATCTTCGAATGCCTGGCGACCTGGGCGCCGAAG GAGCAGGACGCGATCGCGCTGACCGAGCTGGTGCGCATCGACCTCGGGCGCTACATCACCAGCCGCTACGTGGGACCGAA CCGCCAGCTCGAGGCCATCCTGTTCGAGTCCAGCCTGCTGGAGCGCGTGCAGAACGCCATCGAGCGCTCGCCGCGCGGCA ACCTGCTGCTGCTCAGCCCGGCCGTCGCGCAGGACATCCGCGAGCAGGTGCGCCGCATCCTCGGCTCGGCCGCGACACGC GTGGTGGCCATCGCCTCCTCGGACGTGCGCCGGTACATCAAGACGCTGATCGAGCCGGTGGCGCCGCTGCTGCCGGTGCT GTCCTACCAGGAAGTCGATGAAGACGTGGCCCTGCAGCCGGTGGGCTGGGTCACCAATCCGCAGGCCCATTGA Protein sequence : MASSPRSFSTYRGGVRDLLGSAGRYNDLLLAGLLVVIVALFVLPLPTALLDLLIASNLAISLVLLIVAMYVPSALSLSTF PSLLLFTTLFRLALNIASTKLILLHAHAGHIIDTFGKLIVGNNVVVGGVVFLIIAIVQFIVIAKGSERVAEVAARFALDA MPGKQMSIDADVRAGVLSSAQAQKRRQMLEQECQLHGAMDGAMKFVKGDAIASIVIALVNILAGIAIGTMMHEMSLGGAL QRYAILTVGDGMVSQIPSLLVSIAAGIVITRVSTGERRDTQLANQIGQQLMAHPRALIIAGLAVASFLVVPGFPKWVFGL LAAVLLGLGFAVRMRRRKNQTPGWISHREEADQEDSDGDHAIAAPLAVRLSSGLRGGVDRHALDLHLARVKTSVESDLGP VFPRLQLAYADGLAEHEYQVLVHDVAVTQGTLRPGWRMLDPAEAAAPPAGAEVVDPFGPFARVVWVPDEAAGFKSWNNEE VVGLHLDHAVRRNVRELIGLQEVQRLLHSVQRDAPELAAEVSRVASGQRIAEVLRRLLQEGIPIRNLHAIFECLATWAPK EQDAIALTELVRIDLGRYITSRYVGPNRQLEAILFESSLLERVQNAIERSPRGNLLLLSPAVAQDIREQVRRILGSAATR VVAIASSDVRRYIKTLIEPVAPLLPVLSYQEVDEDVALQPVGWVTNPQAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-98 | 46 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 1e-98 | 46 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-102 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VAPA_2c06230 | YP_008493642.1 | type III secretion protein, HrcV family | VFG0198 | Protein | 3e-97 | 42 |
| VAPA_2c06230 | YP_008493642.1 | type III secretion protein, HrcV family | VFG0064 | Protein | 6e-104 | 41 |
