Gene Information

Name : VAPA_2c06210 (VAPA_2c06210)
Accession : YP_008493640.1
Strain :
Genome accession: NC_022234
Putative virulence/resistance : Virulence
Product : putative type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 646510 - 647169 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence :

ATGCAAGGCGGACTACCCGAACCCCTCACCCTGGTCGCGCTCATCGTCGCCTTCGGCATCGCGCCGTTCGTGGCGCTGAT
GGTGACGAGCTACACCAAGCTGGTCATCGTGTTCGGCCTGCTGCGCACCGCACTGGGCCTGCAGCAGACACCGCCCAACA
TGGTGCTCAACGGCATCGCGATCATCCTGTCCGTCTACATCATGGCGCCGGTGGGCATGGACATCGGCGATGCATTGCGC
GGCCGCAGCTTCGGCGCCAAGGGCGAAGGACTTGGCGACATCATGGCCGTCATCGATGCGGCCAAGGCGCCGGTGAAGGA
GTTCCTGCAGAAGCACACGCACGAGCGCGAACGGCAGTTCTTTCTGAAGTCGGCCGCCAACATCTGGCCGAAGGCGCGCG
CCGAGCAGCTGAAGGACGACGACTTCATGGTGCTGGTGCCTAGCTTCACGCTCAGCGAGCTCACGCGCGCCTTCCAGATC
GGCTTCATCATCTACCTGGTGTTCGTCGTGGTCGACCTGATCGTCGCGACGGTGCTGCTGGCACTGGGCATGTCGATGAT
CTCGCCCACCACCATCTCCCTGCCGTTCAAGCTGCTCCTGTTCGTGATGCTCGACGGCTGGACGCGACTGGTACACGGGC
TGGTGCTGTCGTACCGATGA

Protein sequence :

MQGGLPEPLTLVALIVAFGIAPFVALMVTSYTKLVIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPVGMDIGDALR
GRSFGAKGEGLGDIMAVIDAAKAPVKEFLQKHTHERERQFFLKSAANIWPKARAEQLKDDDFMVLVPSFTLSELTRAFQI
GFIIYLVFVVVDLIVATVLLALGMSMISPTTISLPFKLLLFVMLDGWTRLVHGLVLSYR

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	BAB07862.1	HrcR	Virulence	Hrp PAI	Protein	2e-58	57
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	9e-59	57
hrcR	AAD21321.1	HrcR	Virulence	Hrp PAI	Protein	5e-60	54
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-59	54
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-59	54
hrcR	NP_640757.1	type III secretion system protein	Virulence	Hrp PAI	Protein	8e-60	54
hrcR	YP_362153.1	type III secretion system protein	Virulence	Hrp PAI	Protein	8e-60	54
hrcR	YP_198720.1	type III secretion system protein	Virulence	Hrp PAI	Protein	7e-60	54
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	5e-51	53
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-42	43
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	2e-37	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	2e-37	42
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	2e-37	42
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	5e-38	41
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-38	41
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-38	41
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	2e-38	41
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	5e-38	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	3e-35	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG0188	Protein	1e-54	54
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG0394	Protein	1e-51	50
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG0044	Protein	2e-49	47
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG2131	Protein	8e-41	44
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG1012	Protein	4e-36	42
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG2494	Protein	6e-32	42
VAPA_2c06210	YP_008493640.1	putative type III secretion apparatus protein, YscR/HrcR family	VFG0519	Protein	1e-38	41