Gene Information

Name : VAPA_2c04080 (VAPA_2c04080)
Accession : YP_008493428.1
Strain :
Genome accession: NC_022234
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 409792 - 410463 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTCCTGGCCGAAGACGATCCCTTGCTCGGCGATGGTCTCCGCGCGGGCCTGCGTCAGCTCGGTTTCCAGGT
CGACTGGGTGCGGGACGGCGAAGCCGCCGAACGCGAACTGCGCGCCGAGCCGTATGCGGCGGCGGTGCTCGACCTGGGCC
TGCCCCTGAGGGACGGCCTGCGCGTGCTTGCCGACGTCCGGAGGGCGGGTATCAAGATCCCCATCCTGGTACTGACGGCG
CGCGAGGGCGTACCCGATCGCGTTCGCGGGCTCGATGTCGGCGCCGATGACTACGTCGTCAAGCCCGTCGACCTGCATGA
ACTCGCAGCGCGCCTGCGCGCCCTGATCCGCCGCGCCCATGGTCAACCCCAGGAACGCCTTCGCGCCCAGGATGTCGAAC
TCGATCCCGCCGCGCACACGGTGCATCGTGCGGGTAGGCTGGTCGCGCTGCCGTCGCGCGAATTCGCGCTGCTGCACGCG
CTGATGCTCAATGCCGGACGCGTTCTCTCGCGCGAACAGCTCGAGCAGAACCTGTACAGCTGGGGGCAGGAAGTGGAAAG
CAATGCGGTCGAGGTGCACGTGCATCATCTGCGCCGCAAGCTCGGCGCCTCGCTGATCCAGACCGTGCGCGGCGTGGGCT
ATGTGCTCCTGCGCGAAAGGCCGGGCCATTGA

Protein sequence : 
MRILLAEDDPLLGDGLRAGLRQLGFQVDWVRDGEAAERELRAEPYAAAVLDLGLPLRDGLRVLADVRRAGIKIPILVLTA
REGVPDRVRGLDVGADDYVVKPVDLHELAARLRALIRRAHGQPQERLRAQDVELDPAAHTVHRAGRLVALPSREFALLHA
LMLNAGRVLSREQLEQNLYSWGQEVESNAVEVHVHHLRRKLGASLIQTVRGVGYVLLRERPGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-25 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_2c04080 YP_008493428.1 two component transcriptional regulator, winged helix family BAC0197 Protein 1e-26 44
VAPA_2c04080 YP_008493428.1 two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 3e-15 42
VAPA_2c04080 YP_008493428.1 two component transcriptional regulator, winged helix family BAC0083 Protein 2e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAPA_2c04080 YP_008493428.1 two component transcriptional regulator, winged helix family VFG0473 Protein 5e-31 47
VAPA_2c04080 YP_008493428.1 two component transcriptional regulator, winged helix family VFG1390 Protein 4e-23 45