|
Name : lysS (N175_12295) Accession : YP_008488848.1 Strain : Genome accession: NC_022223 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 2607240 - 2608772 bp Length : 1533 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGATGCTGTTCAAAACGAAATGAATCAAGAGCAAATTGCGCAAGAAGAGAACAAACTCATCGCAGAGCGTCGCAG CAAGCTGGATCACATCCGTAAGAGCTGTAAAGCAAATGGCCACCCAAATGACTTTCGTCGTGACAGCCTTGCGGGCGATC TTCAACAGCAATTCGGTGAAAAGAGCAAAGAAGAGTTAGAAGCCTTAAACCATGTTGTGGCGATTGCGGGTCGTATCATG GCGAAACGTGGCCCTTTCCTTGTTATTCAAGAAACCTCTGGTCGTATTCAAGCTTATGCTTCAAAAGAGGTTCAAACTGA GCTGAAGGAAAAATACCAAGGTCTAGACATTGGTGACATCATCGGCGTGAAAGGTGCGTTGCACAAATCTGGCAAAGGCG ATCTCTACGTTAATATGGAAGAGTACGAATTGCTGACAAAGGCACTTCGTCCATTACCAGAGAAGTTCCACGGTTTGACT GACCAAGAGATGCGCTACCGCCAACGTTATGTGGATTTGATTGTTAATGAAAGTTCACGTAATGCGTTCATTGTTCGCTC TAAAGTAATGACTGCAATTCGTAACTTCATGATCTCAAAACAGTTCATGGAAGTAGAAACGCCAATGATGCATGTGATCC CTGGCGGTGCTAGTGCGCGTCCATTCATCACTCACCACAATGCGCTCGACATGCCAATGTACTTGCGTATCGCACCTGAG CTTTACCTTAAGCGTTTAGTTGTGGGTGGCTTTGATCGCGTGTTTGAAATCAACCGTAACTTCCGTAACGAAGGTCTTTC TCCTCGCCATAACCCTGAATTTACTATGATGGAATTCTATATGGCGTACGCAGATTACAATGATCTGATGGACTTTACTG AGGAGTTATTAAGCACTGTGGCACAGGAAGTTTTAGGTTCGACTTCAATGCCTTATGGTGATGAAACGGTAGAATTTGGT GGTCAATATGCTCGCATGAGTATGTTTGAAGCCATCAAACACTACAACCCAGAGCACGCTCAAATCCAAGCGTTAACTGA GCAGGATCTGCAAAACCGTGAGCTCATGGTATCTATCGCGAAATCGGTTCATGTAGACGTTGAACCTTTCTGGACTTGCG GCCAACTGCTTGAAGAGATCTTCGGTGAAACGGCCGAACCTAAGTTGATGCAACCGACCTTCATCACTGGATACCCTGCG GATATTTCACCATTGGCGCGTCGTAGCGATAACAACCCATTCTTCACCGACCGTTTTGAGTTCTTCATCGGTGGTCGTGA AGTCGCCAATGGCTTCTCTGAGCTTAATGATGCTCAAGATCAAGACGAGCGCTTCTTAGCGCAAGTGAATGCCAAAGATG CTGGCGACGATGAAGCCATGTTCTACGATGCTGATTATGTTGTTGCGTTAGAGCACGGTCTCCCACCAACGGCGGGTCAA GGCATTGGTATTGACCGTTTGGTGATGTTACTCACCAACACCCATACGATTCGTGACGTTATCCTATTCCCTGCGATGCG CCCACAGCAGTAA Protein sequence : MTDAVQNEMNQEQIAQEENKLIAERRSKLDHIRKSCKANGHPNDFRRDSLAGDLQQQFGEKSKEELEALNHVVAIAGRIM AKRGPFLVIQETSGRIQAYASKEVQTELKEKYQGLDIGDIIGVKGALHKSGKGDLYVNMEEYELLTKALRPLPEKFHGLT DQEMRYRQRYVDLIVNESSRNAFIVRSKVMTAIRNFMISKQFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPE LYLKRLVVGGFDRVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYNDLMDFTEELLSTVAQEVLGSTSMPYGDETVEFG GQYARMSMFEAIKHYNPEHAQIQALTEQDLQNRELMVSIAKSVHVDVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPA DISPLARRSDNNPFFTDRFEFFIGGREVANGFSELNDAQDQDERFLAQVNAKDAGDDEAMFYDADYVVALEHGLPPTAGQ GIGIDRLVMLLTNTHTIRDVILFPAMRPQQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-139 | 59 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 8e-83 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008488848.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-139 | 59 |
