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Name : smpB (N175_11375) Accession : YP_008488679.1 Strain : Genome accession: NC_022223 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 2421332 - 2421817 bp Length : 486 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAGAAAAAATCAAACTCAAAAGCAGGTAGCAATACCATTGCTGTAAATAAAAAAGCTCGCCACGAATACTTTAT CGAAGATGAAGTAGAAGCAGGCATGGAGCTCCAAGGCTGGGAAGTCAAATCTCTTCGTCAAGGCAAAGCGAATATCGCAG AAAGCTACGTTTTCATGCGAGACGGAGAAGCCTTTGTTTCCGGAATGACAATAACGCCACTGCAGCAAGCATCCACTCAC GTGGTTGCCAACCCAACTCGCGTGCGCAAGCTGTTAATCAGCCGCCGTGAACTGGATAACCTTTATGGACGCATCAACCG TGAAGGCATGACACTTATCGCACTATCACTGTATTGGTCTCGCTCTTGGGTGAAAATCAAAATTGGTGTAGCGAAAGGTA AAAAACTGCATGACAAACGTGATGATTTAAAAGAAAAAGATTGGGCAAGAGAGAAAGCACGCGTAATGAAGAGCTCATTG CGTTAA Protein sequence : MVKKKSNSKAGSNTIAVNKKARHEYFIEDEVEAGMELQGWEVKSLRQGKANIAESYVFMRDGEAFVSGMTITPLQQASTH VVANPTRVRKLLISRRELDNLYGRINREGMTLIALSLYWSRSWVKIKIGVAKGKKLHDKRDDLKEKDWAREKARVMKSSL R |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 8e-59 | 88 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-18 | 45 |
