Gene Information

Name : SPUCDC_4237 (SPUCDC_4237)
Accession : YP_008483762.1
Strain : Salmonella enterica CDC1983-67
Genome accession: NC_022221
Putative virulence/resistance : Virulence
Product : putative type-I secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4289688 - 4290614 bp
Length : 927 bp
Strand : +
Note : -

DNA sequence :
GTGACAACCTATTACAACATCAGTAAATATCGTGAAATGATTGATGGCGTAAATCTGGAGAAAGAGTTTTATAAAAAGAT
GCTGGAAACTTTTTCGTTGCTGGTATCTTCCGGTGTAGCTATGCAATCTGATATGCGTAAAGTACAAGTATCTATCGATG
CATTAAATACCAGAAGCATTATGTATCAGTCGATGTTGGATGATGAAATGTATAAAATGCAGAATATGACTGGTCTGAAT
TTATCGCCAGTTCAGATTCAAAGCGATGAAAAATTCAACCTCTTCAAAAAATATATCTTTGTCGAAAGCCCTGAAAAACT
TATGGACATGGTGATGAAATACAACGATGACTATAAGATGCTTGTCAATACCCGAAAAGCCGCGACCGAAGATATTAATG
CCGCAAAATCATCCTATTTTCCGACTGTAGATCTTGTTTCCAGCTATGTACAGAATAACCCGAGCGGTAGTGCCAAAAAA
AGTGATTATGAAGATGAATTTAAAACGGGTATCAATGTCAGTTTCAACATTTTTAATGGGTTCAGAAATTCAGCCCAGGA
AAGAAAAATGGTGGCAAGTTACTCGCAGGCTAAGCTGCAAATTGACGATTTTTTGATTAAAACGCGTTATAACATTGATT
CACAACTTTCAAGATACGCCGCTGCAAAAGAGACTTACTCAGTGGCGGAACGTTCACATACAAACGCGTTACAGCTTACT
GAATTATATGAGCAGGAGTTTCAGTTAGGGCAAAAAAGTTTGCTTGATTTAATTTCAAGCCGTAATGAAGCATTTCAGGC
ATATGTAAGCATGATCGACAGCAAATATAGCCTGTATATTTTAAAGCTACAGCAACTCTCATTGATTTTTCATTTAATGG
ATTATTTAAAAGGAAATACTGAAAGTGAGTTAAATGTAATGAAATGA

Protein sequence :
MTTYYNISKYREMIDGVNLEKEFYKKMLETFSLLVSSGVAMQSDMRKVQVSIDALNTRSIMYQSMLDDEMYKMQNMTGLN
LSPVQIQSDEKFNLFKKYIFVESPEKLMDMVMKYNDDYKMLVNTRKAATEDINAAKSSYFPTVDLVSSYVQNNPSGSAKK
SDYEDEFKTGINVSFNIFNGFRNSAQERKMVASYSQAKLQIDDFLIKTRYNIDSQLSRYAAAKETYSVAERSHTNALQLT
ELYEQEFQLGQKSLLDLISSRNEAFQAYVSMIDSKYSLYILKLQQLSLIFHLMDYLKGNTESELNVMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC4138 YP_219125.1 ABC transporter outer membrane protein Not tested SPI-4 Protein 5e-139 99
STM4259 NP_463124.1 ABC exporter outer membrane component Not tested SPI-4 Protein 5e-139 99
spi4_C AAC26641.1 ABC exporter outer membrane component homolog Virulence SPI-4 Protein 6e-139 99
siiC CAE11795.1 putative type-I secretion protein, putative outer membrane component Virulence SPI-4 Protein 4e-139 99
STY4456 NP_458556.1 putative type-I secretion protein Not tested SPI-4 Protein 3e-134 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPUCDC_4237 YP_008483762.1 putative type-I secretion protein VFG0579 Protein 2e-139 99