Gene Information

Name : sipA (SPUCDC_2865)
Accession : YP_008482445.1
Strain : Salmonella enterica CDC1983-67
Genome accession: NC_022221
Putative virulence/resistance : Virulence
Product : pathogenicity island 1 effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2879216 - 2881156 bp
Length : 1941 bp
Strand : -
Note : -

DNA sequence :
ATGACGCTGTCAGGGGAAATTAAAGGCCCGCAACTGGAAGATTTTCCCGCGCTGATCAAACAGGCGAGTCTGGATGCATT
GTTTAAATGCGGGAAAGACGCTGAGGCGTTAAAAGAAGTTTTTACCAATTCAAATAATGTCGCCGGTAAGAAAGCGATAA
TGGAGTTTGCCGGGCTCTTTCGTTCAGCGCTCAACGCCACCAGTGATTCTCCTGAGGCGAAGACGCTACTGATGAAGGTG
GGGGCAGAGTATACCGCGCAAATCATAAAAGATGGCCTGAAAGAAAAGTCAGCTTTTGGGCCATGGCTGCCAGAAACAAA
GAAAGCGGAAGCGAAGCTGGAAAACCTGGAAAAGCAGCTGTTAGATATTATCAAAAATAACACTGGTGGTGAATTAAGTA
AATTATCGACGAATCTTGTTATGCAGGAGGTGATGCCCTATATTGCCAGCTGCATTGAACATAACTTTGGCTGTACGTTA
GATCCGTTAACCCGCAGCAATCTTACGCACCTTGTTGACAAAGCGGCGGCGAAGGCGGTTGAGGCGCTTGATATGTGCCA
CCAAAAATTAACGCAAGAGCAGGGTACCAGCGTAGGACGGGAAGCCCGGCACCTTGAAATGCAAACGTTGATACCCCTGC
TGCTACGTAATGTTTTTGCAAAAATTCCTGCAGATAAACTGCCTGACCCTAAAATTCCGGAGCCTGCGGCTGGACCAGTA
CCTGATGGTGGGAAAAAAGCAGAACCTACGGGTATTAATATCAATATTAATATTGATAGCAGTAACCATAGCGTGGATAA
CAGTAAGCATATTAACAATAGCCGAAGCCATGTCGATAATAGCCAGCGCCATATCGATAATAGCAACCATGATAATAGCC
GGAAGACGATTGATAATAGCCGAACATTTATTGATAACAGCCAACGCAATGGCGAGTCACACCATTCGACTAACAGCAGC
AACGTAAGTCATAGTCATTCGCGTGTGGATTCGACTACGCATCAAACGGAGACGGCACACAGCGCCAGCACAGGGGCAAT
TGACCATGGCATCGCGGGTAAAATTGACGTCACGGCTCATGCGACGGCAGAGGCTGTGACCAACGCTTCATCCGAAAGTA
AAGATGGAAAGGTGGTCACGTCAGAAAAGGGCACTACGGGTGAAACAACCTCTTTTGATGAAGTCGATGGCGTAACCAGC
AAGAGCATTATCGGCAAGCCGGTACAGGCCACGGTGCACGGCGTTGATGATAATAAACAGCAAAGCCAGACGGCAGAGAT
TGTGAATGTGAAGCCGCTTGCCAGTCAACTGGCTGGCGTCGAGAATGTTAAAACCGATACCTTACAATCAGACACGACGG
TAATTACAGGTAATAAAGCCGGTACGACCGATAATGATAATAGTCAGACAGATAAGACTGGCCCATTTTCTGGTTTGAAG
TTTAAGCAAAATAGTTTCCTCTCAACAGTACCGAGCGTTACGAATATGCATTCAATGCATTTCGACGCCCGTGAGACGTT
TTTGGGTGTGATACGTAAAGCCCTGGAGCCAGATACCTCCACACCGTTCCCTGTACGCAGAGCGTTTGACGGCTTGCGTG
CGGAAATATTACCCAATGACACGATAAAGAGTGCAGCGTTGAAAGCGCAATGTAGCGATATTGACAAGCACCCAGAATTG
AAAGCGAAAATGGAGACTCTCAAAGAGGTCATTACTCATCATCCACAAAAAGAAAAACTGGCTGAGATTGCACTGCAGTT
TGCCAGAGAGGCGGGGCTGACCAGGCTAAAAGGGGAAACTGACTATGTGTTAAGTAATGTGCTGGACGGCCTTATCGGAG
ACGGTAGCTGGCGAGCTGGCCCGGCTTACGAGTCATACCTGAATAAACCTGGCGTGGATCGGGTTATTACTACCGTTGAT
GGCTTGCACATGCAGCGTTAA

Protein sequence :
MTLSGEIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSALNATSDSPEAKTLLMKV
GAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTL
DPLTRSNLTHLVDKAAAKAVEALDMCHQKLTQEQGTSVGREARHLEMQTLIPLLLRNVFAKIPADKLPDPKIPEPAAGPV
PDGGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFIDNSQRNGESHHSTNSS
NVSHSHSRVDSTTHQTETAHSASTGAIDHGIAGKIDVTAHATAEAVTNASSESKDGKVVTSEKGTTGETTSFDEVDGVTS
KSIIGKPVQATVHGVDDNKQQSQTAEIVNVKPLASQLAGVENVKTDTLQSDTTVITGNKAGTTDNDNSQTDKTGPFSGLK
FKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPEL
KAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRLKGETDYVLSNVLDGLIGDGSWRAGPAYESYLNKPGVDRVITTVD
GLHMQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipA NP_461803.1 secreted effector protein Virulence SPI-1 Protein 0.0 99
sipA YP_217801.1 cell invasion protein Virulence SPI-1 Protein 0.0 99
sipA NP_806485.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 0.0 98
sipA NP_457276.1 pathogenicity island 1 effector protein (function unknown) Virulence SPI-1 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sipA YP_008482445.1 pathogenicity island 1 effector protein VFG0543 Protein 0.0 99