Gene Information

Name : SPUCDC_2372 (SPUCDC_2372)
Accession : YP_008481984.1
Strain : Salmonella enterica CDC1983-67
Genome accession: NC_022221
Putative virulence/resistance : Resistance
Product : transcriptional activator RamA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2385420 - 2385761 bp
Length : 342 bp
Strand : -
Note : -

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGGGGAGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCGCGACACCGACCAGAAGGTGTATGATATTTGTCTCAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAAGCATGGTCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGSYVRERKLKLAARDLRDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKEKHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 3e-19 49
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 5e-18 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 5e-18 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP001138.1.gene612.p Protein 1e-43 99
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP001918.1.gene327.p Protein 6e-20 49
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP000647.1.gene4499. Protein 1e-19 49
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP001138.1.gene4488. Protein 9e-20 49
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA NC_010558.1.6276025. Protein 2e-18 48
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA BAC0371 Protein 9e-19 46
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA NC_002695.1.914293.p Protein 9e-19 46
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP000647.1.gene1624. Protein 3e-18 46
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP000034.1.gene4505. Protein 2e-18 45
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP001918.1.gene2033. Protein 1e-18 45
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA BAC0560 Protein 9e-19 43
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA NC_002695.1.917339.p Protein 9e-19 43
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP000034.1.gene1596. Protein 9e-19 43
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA CP001138.1.gene1637. Protein 1e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA VFG0585 Protein 8e-20 49
SPUCDC_2372 YP_008481984.1 transcriptional activator RamA VFG1038 Protein 2e-18 48