Gene Information

Name : sseD (SPUCDC_1217)
Accession : YP_008480888.1
Strain : Salmonella enterica CDC1983-67
Genome accession: NC_022221
Putative virulence/resistance : Virulence
Product : putative pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1252558 - 1253061 bp
Length : 504 bp
Strand : +
Note : -

DNA sequence : 
ATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCGATAT
CATGCGCAGCTATAACGTAGAAAAACAACGGCTGGCCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAAACAA
TTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGGGGCC
GTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTGGTGT
AGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCCCTGA
CGGAAATTACGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGCTGAA
ATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVLTIGLGA
VGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKSLTEITEKATEIMQQIIGVGSSLVTVLAE
ILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD AAC28882.1 SseD Virulence SPI-2 Protein 2e-62 99
sseD CAA12188.1 SseD Virulence SPI-2 Protein 2e-63 99
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 2e-63 99
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 3e-63 98
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 3e-63 98
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 3e-61 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseD YP_008480888.1 putative pathogenicity island effector protein VFG0502 Protein 6e-64 99