Gene Information

Name : HMPREF0946_01162 (HMPREF0946_01162)
Accession : YP_008477461.1
Strain : Fusobacterium sp. 3_1_36A2
Genome accession: NC_022196
Putative virulence/resistance : Virulence
Product : DctP family TRAP transporter solute receptor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1909590 - 1910573 bp
Length : 984 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAAAACTAGTTTATTAAAGGTGGCAATTTTATTTGGTGTTATGACAACTTCTGCTTTTGCAGCAAAGTATAATTT
GAAAATGGGAATGACAGCTGGAACTTCTCAAAATGAATATAAAGCAGCAGAAGTGTTTGCAAAAGAATTAAAAAAGAGAT
CTAATGGAGAAATTGAATTAAAATTATACCCAAATGCTCAATTAGGAAAAGACGACCTTGCTATGATGCAACAATTAGAA
GGAGGAGCTTTAGATTTTACTTTTGCTGAAACTGGAAGATTTTCAACATTTTTTCCAGAAGCTGAAGTATACACTTTACC
TTATATGATTAAAGATTTCAATCATATGAAAAAAGCTGTGAACACAAAATTTGGTAAAGATCTATTTAAAAAAGTACACG
ATAAAAAAGGGATGACTGTTTTAGCACAAGCATATAATGGTACTAGACAAACAACTTCTAATAAGGCAATAAAATCTTTA
TCTGATATGAAAGGAATGAAATTAAGAGTTCCATCTGCAGCAGCAAACTTAGCTTTTGCAAAATATACAGGTGCTTCTCC
TACTCCTATGGCTTTTTCTGAAGTTTACCTTGCATTACAAACTAATGCAGTTGACGGTCAAGAAAATCCTTTATCAACAA
TAAAAGCTCAAAAATTTTATGAAGTACAAAAATATTTGGCTATGACTAATCACATATTAAATGACCAATTATATCTTGTA
AGTAATATTACTATGGAAGAATTACCAGAAAATCTTCAAAAAGTTGTAAAAGAGTCAGCTGAAGTTGCAGCAGAATACCA
TACAAAACTATTTATGGATGAAGAAAAATCACTTAAAAATTTCTTCAAAAGTAAGGGAGTTACTATAACTGAACCAAATT
TGGCAGACTTTAAAAAAGCTATGAAACCATTTTATGATGAATATACAAAGAAAAACGGAAAAGTTGGAGAAGATGCAATA
AAAGCAATAGAAGCAGTTAGATAG

Protein sequence : 
MKKTSLLKVAILFGVMTTSAFAAKYNLKMGMTAGTSQNEYKAAEVFAKELKKRSNGEIELKLYPNAQLGKDDLAMMQQLE
GGALDFTFAETGRFSTFFPEAEVYTLPYMIKDFNHMKKAVNTKFGKDLFKKVHDKKGMTVLAQAYNGTRQTTSNKAIKSL
SDMKGMKLRVPSAAANLAFAKYTGASPTPMAFSEVYLALQTNAVDGQENPLSTIKAQKFYEVQKYLAMTNHILNDQLYLV
SNITMEELPENLQKVVKESAEVAAEYHTKLFMDEEKSLKNFFKSKGVTITEPNLADFKKAMKPFYDEYTKKNGKVGEDAI
KAIEAVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 9e-67 47
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 9e-67 47
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 3e-67 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0946_01162 YP_008477461.1 DctP family TRAP transporter solute receptor VFG1112 Protein 4e-67 47