Gene Information

Name : BN865_13040 (BN865_13040)
Accession : YP_008473941.1
Strain : Campylobacter coli 76339
Genome accession: NC_022132
Putative virulence/resistance : Virulence
Product : Flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1240537 - 1241280 bp
Length : 744 bp
Strand : +
Note : -

DNA sequence :

TTGAAAAAAATTCTAACACTATTGTTTATCAGCGGTTTTTTTAGCGTTATTTTCGCTGCCGAAGCAACGATTCCTACGGT
AAATTTAAGCCTAAGTGCTCCTGATACTCCTAATCAACTTGTTACAACATTAAATATAGTCATAGTCTTAACCATACTTG
CATTAGCTCCAAGTATAGTTTTTGTTATGACTTCTTTTTTGCGCTTGATCGTAGTTTTTTCATTCTTACGTCAAGCCATG
GGAACTCAAAGCATGCCACCTAATACGATCTTAGTAACTTTGGCATTGATTTTAACCTTTTTTATAATGGAACCTGTGGC
TACAAAGTCTTATAACGAAGGCATCAAGCCTTATTTAGCAGAGCAAATAGGCTATGAAGAAGCTTTTGCAAGAGGCGTAA
AACCTTTTAAAGATTTTATGCTTAAAAACACACGCGAAAAAGATTTAGCTTTATTTTATCGCATACGCAACCTGCCTAAT
CCTAAAACCATTGACGATGTTCCACTTACGGTTTTAGTTCCTGCTTTTATGATTTCAGAACTTAAAACTGCTTTTGAGAT
AGGCTTTTTGATTTATCTGCCGTTTTTGGTTATCGATATGGTTGTAAGTTCGGTTTTGATGGCGATGGGGATGATGATGC
TTCCTCCTGTCATGATTTCACTGCCTTTTAAACTTTTGATTTTTGTTCTTGTAGATGGGTGGAATTTACTTGTTCAAAGA
TTGGTAGAAAGTTTTGTAACTTAA

Protein sequence :

MKKILTLLFISGFFSVIFAAEATIPTVNLSLSAPDTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAM
GTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPN
PKTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQR
LVESFVT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	4e-29	44
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	1e-29	44
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	1e-29	44
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	7e-30	44
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	4e-29	44
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	2e-26	44
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	4e-18	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	4e-18	42
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	4e-18	42
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	1e-27	41
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-26	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	3e-25	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	3e-25	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	8e-25	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	3e-25	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	4e-25	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	3e-25	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	4e-25	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	4e-25	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	4e-25	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	3e-25	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	3e-25	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG2338	Protein	1e-42	52
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG2494	Protein	2e-47	52
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG1259	Protein	2e-45	51
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG2016	Protein	2e-43	49
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG0519	Protein	4e-30	44
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG0394	Protein	3e-28	44
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG0188	Protein	1e-28	44
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG0044	Protein	5e-27	43
BN865_13040	YP_008473941.1	Flagellar biosynthesis protein FliP	VFG0827	Protein	2e-25	41