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Name : HPSA20_0925 (HPSA20_0925) Accession : YP_008471883.1 Strain : Helicobacter pylori SouthAfrica20 Genome accession: NC_022130 Putative virulence/resistance : Unknown Product : catalase family protein Function : - COG functional category : - COG ID : - EC number : - Position : 859323 - 860840 bp Length : 1518 bp Strand : - Note : - DNA sequence : ATGGTTAATAAAGATGTGAAACAAACCACCGCTTTTGGCGCTCCCGTTTGGGATGACAACAATGTGATCACGGCTGGCCC TAGAGGTCCTGTTCTTTTACAAAGCACTTGGTTTTTGGAAAAGTTAGCGGCGTTTGACAGAGAAAGAATCCCTGAAAGGG TTGTGCATGCTAAAGGAAGTGGGGCTTATGGCACTTTCACCGTGACTAAAGACATCACTAAATACACTAAAGCGAAAATT TTCTCTAAAATTGGCAAGAAAACAGAATGCTTCTTTAGATTTTCTACTGTGGCTGGTGAAAGAGGTAGTGCGGATGCGGT AAGAGACCCAAGAGGTTTTGCGATGAAGTATTACACTGAAGAAGGCAACTGGGATTTAGTGGGCAACAACACACCGGTTT TCTTTATCCGTGATGGGATCAAATTCCCTGATTTTATCCACACTCAAAAAAGAGATCCTCAAACCAATTTGCCTAACCAC GACATGGTATGGGATTTTTGGAGCAATGTTCCTGAAAGCTTATACCAAGTTACATGGGTTATGAGCGATAGAGGTATCCC TAAATCTTTCCGCCATATGGATGGTTTTGGCAGCCACACTTTTAGCTTTATCAACGCTAAAGGCGAACGCTTTTGGGTGA AATTCCACTTTCACACCATGCAAGGCGTTAAGCACTTGACTAATGAAGAAGCCGCAGAAGTCAGAAAGTATGATCCGGAT TCCAATCAAAGGGATTTGTTCAATGCGATCGCTAGAGGGGATTTCCCAAAATGGAAATTGTCTGTTCAAATCATGCCAGA AGAGGATGCCAAGAAGTATCGATTCCATCCGTTTGATGTTACTAAAATTTGGTATCTCCAAGATTATCCGTTGATGGAAG TGGGTGAAGTAGAATTGAATAGAAATCCAGAAAACTATTTCGCAGAAGTAGAACAAGCGGCTTTCACTCCGGCTAATGTC GTTCCTGGAATTGGCTATAGCCCAGACAGAATGTTACAAGCTCGCTTGTTCTCTTATGGGGATACACACCGCTACCGCTT AGGCGTTAATTACCCTCAAATACCGGTTAATAAACCAAGATGCCCGTTCCACTCTTCTAGCAGAGATGGTTACATGCAAA ATGGATACTATGGCTCTTTACAAAACTATACACCTAGCTCATTGCCTGGTTATAAAGAAGATAAGAGTGCAAGAGATCCT AAGTTCAATTTAGCTCACATTGAGAAAGAATTTGAAGTGTGGAATTGGGATTACAGAGCTGAGGATAGCGATTACTACAC CCAACCAGGCGATTACTACCGCTCATTGCCAGCTGATGAAAAAGAAAGGTTGCATGACACTATTGGAGAGTCTTTAGCTC ATGTTACTCATAAGGAAATTGTGGATAAGCAATTGGAGCATTTCAAGAAAGCTGACCCCAAATACGCTGAGGGAGTTAAA AAAGCTCTTGAAAAACACCAAAAAATGATGAAAGACATGCATGCCAAAGACATGCATCACACTAAAAAGAAAAAGTAA Protein sequence : MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKI FSKIGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDGIKFPDFIHTQKRDPQTNLPNH DMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSFINAKGERFWVKFHFHTMQGVKHLTNEEAAEVRKYDPD SNQRDLFNAIARGDFPKWKLSVQIMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGEVELNRNPENYFAEVEQAAFTPANV VPGIGYSPDRMLQARLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDP KFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVK KALEKHQKMMKDMHAKDMHHTKKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| katA | ABD94664.1 | catalase isozyme A | Not tested | ExoU island A | Protein | 2e-134 | 61 |
| katA | YP_005126717.1 | catalase | Not tested | Not named | Protein | 5e-92 | 52 |
| katA | YP_005680448.1 | catalase | Not tested | PiCp 3 | Protein | 7e-90 | 48 |
| katA | YP_005682539.1 | catalase | Not tested | PiCp 3 | Protein | 7e-90 | 48 |
| katA | YP_003782575.1 | catalase | Not tested | PiCp 3 | Protein | 7e-90 | 48 |
| katA | YP_005684630.1 | catalase | Not tested | PiCp 3 | Protein | 7e-90 | 48 |
