|
Name : ureC (HPSA20_0083) Accession : YP_008471051.1 Strain : Helicobacter pylori SouthAfrica20 Genome accession: NC_022130 Putative virulence/resistance : Virulence Product : urease, alpha subunit Function : - COG functional category : - COG ID : - EC number : 3.5.1.5 Position : 76675 - 78351 bp Length : 1677 bp Strand : - Note : - DNA sequence : ATGTATGGCCCTACTACAGGCGACAAAGTGAGATTGGGCGATACAGAACTGATTGCTGAAGTAGAACATGACTACACCAT TTATGGCGAAGAACTTAAATTTGGTGGCGGTAAAACTTTAAGGGAAGGCATGAGCCAATCTAACAATCCTAGCAAGGAAG AATTAGATTTAATCATCACTAACGCTTTGATCATTGACTATACCGGTATTTATAAAGCGGACATTGGCATTAAAGATGGC AAAATCGCTGGTATCGGTAAAGGCGGTAACAAAGACATGCAAGATGGCGTTAAAAACAATCTTAGCGTAGGTCCTGCTAC TGAAGCGCTAGCTGGTGAAGGCTTGATCGTAACTGCCGGTGGGATTGACACACACATCCACTTCATTTCACCCCAACAAA TCCCTACAGCTTTTGCAAGCGGTGTAACAACCATGATTGGTGGCGGAACCGGTCCAGCTGATGGCACTAACGCAACCACT ATCACTCCAGGTAGAAGAAATTTAAAATGGATGCTCAGAGCGGCTGAAGAATATTCTATGAACTTAGGTTTCTTAGGCAA AGGTAACGCTTCTAATGACGCAAGCTTAGCCGATCAAATTGAAGCCGGTGCAATTGGCTTTAAAATCCACGAAGACTGGG GCACCACTCCCTCTGCAATCAACCATGCGTTAGATGTTGCGGACAAATACGATGTGCAAGTCGCTATCCACACAGACACT TTGAACGAAGCCGGTTGTGTAGAAGACACTATGGCAGCGATTGCTGGGCGCACTATGCACACTTTCCACACTGAAGGCGC TGGCGGCGGACACGCTCCTGATATTATTAAAGTAGCCGGTGAACACAACATTCTACCCGCTTCAACTAACCCTACTATCC CTTTCACCGTGAATACAGAAGCCGAACACATGGACATGCTCATGGTGTGTCACCACTTGGATAAAAGCATTAAAGAAGAT GTCCAGTTCGCTGATTCAAGGATCCGCCCTCAAACCATTGCGGCTGAAGACACTTTGCATGACATGGGGATTTTCTCTAT CACTAGTTCTGACTCTCAAGCGATGGGCCGTGTGGGTGAAGTTATCACTAGAACTTGGCAAACAGCTGACAAAAACAAAA AAGAATTTGGCCGCTTGAAAGAAGAAAAAGGCGACAACGACAACTTCAGAATCAAACGCTACTTGTCTAAATACACCATT AATCCAGCAATCGCTCATGGGATTAGCGAGTATGTCGGTTCTGTGGAAGTGGGCAAAGTGGCTGACTTGGTATTATGGAG TCCAGCATTCTTTGGTGTGAAACCTAACATGATCATCAAAGGCGGATTCATTGCGTTAAGTCAAATGGGTGATGCGAACG CTTCTATCCCTACCCCGCAACCGGTTTATTACAGAGAAATGTTTGCCCACCATGGTAAAGCTAAATACGATGCAAATATC ACTTTTGTGTCTCAAGCGGCTTATGACAAAGGCATTAAAGAAGAGTTAGGGCTTGAAAGACAAGTATTACCGGTTAAAAA TTGCAGAAATATCACTAAAAAAGATATGCAATTCAACGACACTACCGCTCACATTGAAGTCAATCCTGAAACCTACCATG TGTTCGTGGATGGCAAAGAAGTAACTTCTAAACCGGCTAATAAAGTAAGCTTAGCGCAACTCTTTAGCATTTTCTAG Protein sequence : MYGPTTGDKVRLGDTELIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIIDYTGIYKADIGIKDG KIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATT ITPGRRNLKWMLRAAEEYSMNLGFLGKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDT LNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKED VQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTI NPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANI TFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 6e-154 | 62 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 6e-154 | 62 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-144 | 60 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-143 | 60 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 1e-143 | 60 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-143 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_008471051.1 | urease, alpha subunit | VFG0270 | Protein | 0.0 | 99 |
