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Name : lysS (HPSA20_0203) Accession : YP_008471169.1 Strain : Helicobacter pylori SouthAfrica20 Genome accession: NC_022130 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 186348 - 187853 bp Length : 1506 bp Strand : + Note : - DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATTCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTAACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTGAAAGATTTAGAAGAGCCTAAAGACA AAGAAAAAGGCGAGAGTATTGTAGGGAGGGTTAAGCTCTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAGTTGAAGAT GAAAGCGCGATTTTACAAGCCTATGTTTCGCAAAATGAATTGAACGATGAATTTAAAAGCTTAAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGCTTTCCTTTCGCCACTAAAACCGGTGAATTAAGCATTCATGCCCTAGAATTTCACA TTTTAAGCAAAACCATTGTGCCATTGCCTGAAAAGTTTCATGGATTGAGCGATATAGAGTTGCGTTACCGCCAGCGCTAC TTGGATTTGATAGTCAATCCCAGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATTGTTTCTAGCGTGCGGAAATTCTT TGAAATGGAGGGCTTTTTGGAAGTGGAAACCCCGATGATGCACCCCATTCCTGGCGGGGCGAATGCAAGGCCTTTTATCA CTTATCATAACGCTTTAGAAATTGAAAGGTATTTGAGGATCGCCCCAGAATTATACCTTAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGTAATTTTAGGAATGAAGGCATGGATCACAGCCATAACCCTGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAATTAAGCAAGAGGTTGTTTGACTACTTGCTAAAGACTT TAAATTTAGATTCAAAAATCATTTATAACGACATGGAAGTGGATTTCAATCAAACGAGCGTGATTTCTTATTTAGACGCT TTAGAAACAATAGGGGGCATTAGCAAGGAAATTTTAGAAAAAGAAGACAAACTTTTGGCTTATTTGTTAGAGCAAGGCGT CAAAGTAGAGTCCAATCTCACTCATGGCAAATTGCTCGCTGAAGCGTTTGATCATTTTGTGGAGCATAAACTCATTCACC CCACTTTTGTAACGCAATACCCTATTGAAATTAGCCCGCTAGCCAGACGCAACGATAGTAACCCTAACATTGCTGACAGA TTTGAATTGTTTATTGCAGGAAAAGAAATCGCTAACGGCTTTAGCGAGTTGAATGACCCCTTAGATCAATTAGAGCGCTT TAAAAGTCAAGTAGCCGAAAAAGAAAAAGGCGATGAAGAGGCCCAATACATGGACGAAGATTATGTGTGGGCATTAGCTC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGTATTGACAGATTAGTGATGTTACTCACTGGGGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGCCCTGTTAAAAACGATTTTAATGTTGAAAGTGGAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKGESIVGRVKLLRLMGKACFIKVED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKEILEKEDKLLAYLLEQGVKVESNLTHGKLLAEAFDHFVEHKLIHPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKSQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008471169.1 | lysine--tRNA ligase | VFG1668 | Protein | 6e-106 | 50 |
