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Name : serS (HPSA20_1544) Accession : YP_008472475.1 Strain : Helicobacter pylori SouthAfrica20 Genome accession: NC_022130 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1427801 - 1429048 bp Length : 1248 bp Strand : - Note : - DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGACTTTGATAAGGTGGCTCATTCTTTAAAAAAGCGTAACAGCGCGATGGATGA TGAGCTAGAGCGTTTGCGCGAAATCATCACGCATTATAAAAAACAACTCATTGAGTTAGAAAGCTTGCAAGCCTTCCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGGTGCAAGCGATCTCAAAAAAGAACTAGAAAGCAAT AAAATCAAATTGAATGAGCTTTCTAAAAGCGTGAGCGAGTTGGAGCAAGAAATTGATTCAAAGCTTTCCATAATCCCTAA TCTAGTGGATGAAAAAACCCCTTTAGGTGCAAGCGAAGAGGATAATGTAGAAATTAAAAAAATTTTAACCCCAAGAAATT TCACTTTCACGCCTAAAGAGCATTTTGAACTCGCTCAAAAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCAGTCATTAGGGGTTTTGGGGCGAAAATTTATCGCGCGCTCATTCATTTAATGTTGGATTTTAACGA AAAAAACGGCTTTGAAATCATCTACACGCCGGCTTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGACGTTTTTAAAATAGAAAATGAAAATTTGTATCTGATCCCCACTTCTGAAGTAACGCTCACCAATCTATAC AACGACACGATCATTAGCGTTGAAAAACTCCCCATTAAAATGACCGCACACACGCCTTGTTTCAGGAGCGAAGCAGGGAG CGCGGGCAAGGACACAAGGGGAATGATAAGACAACACCAATTTGACAAGGTGGAATTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCCATGCAAGAATATATGCTAGAGAGCGCGAGCGCGATTTTAAAGGCGTTGGAATTGCCTCACCGGTTCGTG CAATTATGCAGTGGGGATTTAGGCTTTAGCGCAAGCAATACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGTTA CAGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAAGCCAGGCGGGCCAAAATCCGCTTCAAGGAAAATCAAAAAA ACCAATTAGCGCACACTCTGAATGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFDKVAHSLKKRNSAMDDELERLREIITHYKKQLIELESLQAFQNKVSKEFGIKMAQKVGASDLKKELESN KIKLNELSKSVSELEQEIDSKLSIIPNLVDEKTPLGASEEDNVEIKKILTPRNFTFTPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTSEVTLTNLY NDTIISVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEYMLESASAILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-79 | 46 |
