Gene Information

Name : O5Y_04780 (O5Y_04780)
Accession : YP_008451551.1
Strain : Rhodococcus erythropolis CCM2595
Genome accession: NC_022115
Putative virulence/resistance : Resistance
Product : copper-transporting ATPase CopB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1052307 - 1054385 bp
Length : 2079 bp
Strand : +
Note : COG2217 Cation transport ATPase

DNA sequence :
ATGGATCACAGTCAGATGGACCAGAGCGAGACGGACCATAGCGCGATGGACCATAGCCAGATGGAGCACGGTGCACACGG
TGGTCACGCGGATCATGTCGCACAGTTCCGGACGTTGTTCGCAGTCATGCTGGTAATCGCAGTTCCGGTTGTTGCGGCAG
ATGCGATGTTCGCTGATCTGGTCGGGTACACATTGCCGGAAAACTCTCTGGTGGAATGGATCTCACCGGTGCTCGGCACC
GTGATGTACCTCTGGGGAGGCAAGCCGTTCCTCACCGGCGCTGTCGCCGAAATACGTTCTCGGCAACCCGGAATGATGCT
TCTGATTGCACTTGCCATCACCGTTGCCTTCCTCGCTTCTTGGGCTGCAAGTCTGCACTGGGTGGATCACACTCTTGATT
TCTGGTGGGAGCTCGCGCTTCTGATCGTGATCATGTTGTTGGGTCACTGGATCGAGATGCGTTCGCTCAGTCAGACATCG
AGCGCCTTGGATTCGCTTGCCGCTTTGCTGCCCGACGAGGCCGAACGGGTGGTGGGGGAGTCGGTGGAAACCGTGCCCAC
CGCAGCTCTGGCCACCGGCGACCTGGTGATAGTTCGTCCCGGCGCCCGCGTTCCCTCGGACGGAACGGTCGTCGAGGGCA
GTGCCGACATGGACGAATCCATGATCACGGGCGAGTCGAAGACCGTCCGCCGGACTGTCGGAGATCAGGTGGTGGCCGGC
ACCGTAGCCACCGACTCGGCACTTCGGCTTCGAGTCACCGCTGTGGGAGAAGACACCGCGCTCGCCGGTATTCGGCGCCT
GGTCGAACAGGCGCAGAACTCGTCGAGTCGTGCTCAGGTGTTGGCGGACAAGGCCGCTGCTCTGCTGTTCTGGTACGCAC
TGGGCGCGGCAGTGCTGACCGCGATCGCCTGGAGTATCTGGGGCACACCGGAGAGCGCAGTCACCAGGACGATCACCGTT
CTGGTGATCGCCTGCCCGCACGCGCTCGGGTTGGCGATTCCGCTGGTCGTCTCCATCGCGACGGAACGAGCAGCTCGGGC
TGGGATTCTGATCACCGACCGCATGGCCCTCGAGGTGATGCGCAACGTAGACACCGTTCTCTTCGACAAGACCGGCACTC
TCACCAAGGGGGAGCCCGCAGTGGTCGGTGTGCGCGGCGTCGACGGGTACACCGACGACGAAGTTCTCAGCGCAGCAGCT
GCCGTCGAATTCGACAGCGAACATCCACTCGGGCGCGCCGTCGTCGCAGCAGCGCGGGACTTGTCGCTCGAATTCACTTC
GGGTTCCGACTTTCAGGCGCACAACGGAATCGGGGTTGCTGCGGACGTCGGCGGCGCACGCGTCGGTGTCGGCGGACCGG
GGATGTTGAGATCGGTCGGGGCCACAGCGATCCCGGGGACCGAAGAGTGGCTCAGTGACGGGTCGACGGTCCTGCATGTA
GTGCGTGACGAGAAGGTAATCGGCGCATTGGCATTGGCCGACGAGATTCGCCCGGAATCAGCATTGGCCGTCGACGCCCT
CCATGCTCGCGGTGTTCGAGTGGCCATGGTCACCGGAGACGCGGAGGCCGTGGCCCATTCGGTGGCTCGCAGGCTCGGGA
TCGACGAAGTTTTCGCCGAAGTGCTTCCTCAGGACAAGGGCGCGCAGGTATCTCGGCTTCAGGCTGCGGGCCACCGCGTG
GCGATGGTCGGTGACGGGGTCAACGATGCGCCGGCACTCGCCCAGGCGGATGTGGGTATCGCGATCGGTGCCGGAACCGA
CGTGGCGATCGCATCGGCGGGAGTTGTTCTGGCCAGCGATGATCCGCGTTCGGTGAGCTCGGTCATCGAGCTGTCCCGCG
CCACCTACCGCAAGATGGTTCAGAACCTCTGGTGGGCAGCGGGATACAACGCGATCTCGGTTCCCCTCGCTGCGGGAGTA
CTGGCGCCCGTCGGGTTTGTGCTGCCGATGGAGGTCGGAGCAATCCTGATGTCGGTATCCACTGTGGTCGTTGCCGCGAA
TGCCCAGTTGCTGCGACGCTTGGACTTGCGGCAACCACCGGTGACCGCGTTCGAGTCGAGAGTGCTCACACCGCAGTAG

Protein sequence :
MDHSQMDQSETDHSAMDHSQMEHGAHGGHADHVAQFRTLFAVMLVIAVPVVAADAMFADLVGYTLPENSLVEWISPVLGT
VMYLWGGKPFLTGAVAEIRSRQPGMMLLIALAITVAFLASWAASLHWVDHTLDFWWELALLIVIMLLGHWIEMRSLSQTS
SALDSLAALLPDEAERVVGESVETVPTAALATGDLVIVRPGARVPSDGTVVEGSADMDESMITGESKTVRRTVGDQVVAG
TVATDSALRLRVTAVGEDTALAGIRRLVEQAQNSSSRAQVLADKAAALLFWYALGAAVLTAIAWSIWGTPESAVTRTITV
LVIACPHALGLAIPLVVSIATERAARAGILITDRMALEVMRNVDTVLFDKTGTLTKGEPAVVGVRGVDGYTDDEVLSAAA
AVEFDSEHPLGRAVVAAARDLSLEFTSGSDFQAHNGIGVAADVGGARVGVGGPGMLRSVGATAIPGTEEWLSDGSTVLHV
VRDEKVIGALALADEIRPESALAVDALHARGVRVAMVTGDAEAVAHSVARRLGIDEVFAEVLPQDKGAQVSRLQAAGHRV
AMVGDGVNDAPALAQADVGIAIGAGTDVAIASAGVVLASDDPRSVSSVIELSRATYRKMVQNLWWAAGYNAISVPLAAGV
LAPVGFVLPMEVGAILMSVSTVVVAANAQLLRRLDLRQPPVTAFESRVLTPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 4e-87 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0629 Protein 1e-111 46
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0101 Protein 8e-79 46
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0079 Protein 5e-116 42
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0383 Protein 3e-104 41
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0183 Protein 2e-78 41
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0102 Protein 5e-77 41
O5Y_04780 YP_008451551.1 copper-transporting ATPase CopB BAC0568 Protein 5e-69 41