Gene Information

Name : O5Y_28635 (O5Y_28635)
Accession : YP_008456265.1
Strain : Rhodococcus erythropolis CCM2595
Genome accession: NC_022115
Putative virulence/resistance : Virulence
Product : manganese ABC transporter permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6210722 - 6211600 bp
Length : 879 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGAACGTCGTAGAACTGCTACTTGATCCTCTCCAGTACGGATTCATGGTGCGCGCGTTGGCCGTTGCGGTTGTGGCGGC
GGTTGTCTGCGCGGTGCTCAGTTGTTGGTTGGTGCTCATCGGGTGGTCACTGATGGGCGATGCCGTCTCGCACGCTGTCC
TGCCCGGTGTTGTCCTCGCCTACGTCGTCGGCGCTCCATTTGCCATCGGGGCCTTGATCTTCGGGCTGATCGCCGTCGCA
CTGATCGGACTGATCCGTAACACCAGCCGCGTCAAGGAAGACGCCGCGATCGGTATCGTCTTCACGACTCTCTTTGCGTT
CGGTTTGGTTCTCATCTCGGTGACCCCCAGCCAGACCGATCTCAACCACATCATTTTCGGCAACCTGCTGGGGGTGAGCT
CGTCCGATCTTCTGCAGGTCGCGATACTCGGCGCGTTGGCGTTGAGCATTCTGTTGATCAAGCGTCGCGATCTGACGTTG
TTTGCCTTCGACCCGATCCATGCCAACGCGATAGGTCTTTCGCCCAAGCGTCTCGGAGCGCTGCTACTCGGCGTCCTCGC
ACTCACGTCCGTTGTGGCGCTGCAAGCTGTCGGAGTCGTGCTGGTGGTGGCGATGCTGATCATCCCCGGCGCGACGGCCT
ACCTTCTCACTGACAAGTTCTCGCGGATGCTGGTGATAGCTCCGGTGGTTTCCGCAATCTGCGCGATTACGGGTATCTAC
GTCAGCTACTACCTCGACACAGCTTCCGGGGGCATGGTTGTGATGACGCAGGGCATCGTGTTCGCCCTGGTGTACCTGTT
CAGCCCGTCGCAGGGGGTCATCGCGAAATGGACTTCGCAGCGGCGTAAGACCCGAGCGGAATACAGCGCCGTGGCTTGA

Protein sequence : 
MNVVELLLDPLQYGFMVRALAVAVVAAVVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAYVVGAPFAIGALIFGLIAVA
LIGLIRNTSRVKEDAAIGIVFTTLFAFGLVLISVTPSQTDLNHIIFGNLLGVSSSDLLQVAILGALALSILLIKRRDLTL
FAFDPIHANAIGLSPKRLGALLLGVLALTSVVALQAVGVVLVVAMLIIPGATAYLLTDKFSRMLVIAPVVSAICAITGIY
VSYYLDTASGGMVVMTQGIVFALVYLFSPSQGVIAKWTSQRRKTRAEYSAVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-36 46
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-36 46
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-36 46
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-36 46
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-36 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-34 43
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-34 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-34 43
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-34 43
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-34 43
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-27 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein BAC0441 Protein 1e-38 47
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein BAC0442 Protein 1e-33 47
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein BAC0352 Protein 4e-36 46
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein BAC0351 Protein 2e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein VFG0528 Protein 4e-36 46
O5Y_28635 YP_008456265.1 manganese ABC transporter permease protein VFG0527 Protein 2e-34 43