Gene Information

Name : LBPG_01964 (LBPG_01964)
Accession : YP_008447219.1
Strain : Lactobacillus paracasei 8700:2
Genome accession: NC_022112
Putative virulence/resistance : Virulence
Product : ClpL protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2028266 - 2030416 bp
Length : 2151 bp
Strand : -
Note : -

DNA sequence :
ATGGCAAACTTTAACGATCCGTTTTTCAATCATGATATGGATGATGTTTTTAATCAAATGTTACAAGGTATGGGCAAAGG
TGAATCTGCCCGTTATGTGGTAAATGGTCACGAAATGACGCCAGATGAATTCGCACAGTATCGGGCAACTGGGCAGTTGC
CGAAGCAAGGTGACGAAATTCCAGTTGAAACGACTGGTGAACAAGCGGTTAAAAAAGGTGGCATTCTTGAAAAGCTTGGG
CGTAATTTAACGCAGGAAGCTAAGGATGGTTTGCTTGATCCTGTGATCGGTCGTGAGCATGAAATTCAAGAAACAGCAGA
AATTTTGAGTCGTCGGACGAAGAATAACCCGATTTTGGTCGGGGATGCCGGTGTCGGCAAGACGGCGGTTGTTGAAGGTT
TGGCGCAGGCGATTGTCAAAGGCAATGTGCCCGAGTCGATCAAGGACAAGCAGATTTGGTCAATTGATTTGTCGAACCTT
GAAGCTGGCACGCAGTATCGTGGCAGTTTTGAAGAGAAGATTCAGAATCTGATCAAAGAAGTCAAAGCGGCAGGCAACGT
GATTCTGTTCTTTGATGAAATCCATCAAATTCTTGGTGCCGGTGCGACTGGCGGCGAAGAGTCTGGCGGCAAAGGGTTGG
CCGATATCATCAAGCCGGCGCTATCTCGCGGTGAGATTACTGTGATTGGCGCAACAACGCAAGATGAGTATCGTAACACG
ATCATGAAGGACAGCGCGTTGGCACGGCGGTTCAACGATGTCACCATTAATGAACCGACCGCGGCTGATACCGTTAAGAT
TTTGGAAGGCATCAAGAAGCTTTATGAACAGCATCATCACGTTCAATTGCCAGAAAATGTTTTGAAGGCTGCGGTTGATT
ACAGTATCCAATATATACCACAGCGGTCATTGCCGGATAAAGCCATCGATTTGATTGACATGACGGCGGCGCATTTGGCA
AGCAAGCATCCGATTGTAGATAAGGTTGAACTCGAGAAACAGATTAAGGATCTGAACGCTCAAAAGGATGCTGCGGCCAA
GGCGGAGGACTTCGAAAAAGCCGCTAACCTTAAGAAGACGATTGCCGACAAGCAACATCAGCTTGATGGTACGAAAGACG
AGAAGCCTGTCGTTGCAACGCCTAATGATGTAGCGGCTGCGGTTGAACGCTTGACTGGTGTGCCAGTTTCCAAACTTGGC
GCTTCCGATATTGAACGTCTGAAGGGTATTGGTAAGCGTCTTAAGGGCAAGGTCATTGGTCAGGATGAAGCTGTTGAGAT
GGTCGCTCGCGCCATTCGCCGCAACCGAGCCGGTTTTGATGAAGGCAATCGGCCAATTGGCAGTTTCCTATTTGTCGGGC
CTACCGGTGTCGGCAAGACTGAGTTGGCTAAGCAATTAGCGTTAGATCTTTTTGGCAGCAAGGATGCGATCATTCGCTTG
GATATGTCTGAATACAGTGATCGTACGGCAGTGTCCAAGTTGATCGGTACCAGTGCTGGGTATGTTGGCTATAACGACAA
CAACAACACCTTGACCGAACAAGTACGTCGCAATCCATATTCGATTGTTTTACTTGATGAAATCGAAAAGGCTGATCCGC
AAGTTTTGACTCTGTTACTTCAGGTGCTGGACGATGGTCGGTTGACGGATGGTCAAGGTAACGTGGTTGACTTTAAGAAC
ACAGTGATCATCGCGACTTCCAATGCTGGCTTTGGCAACGAGACGCTGACTGGCAAGAAGGAGCAAGACGAAGATCTGAT
GAAGCGGTTGGCACCTTACTTCCGTCCTGAATTCCTGAACCGGTTTAACGGGATCGTTGAGTTCAGTCATCTGACCAAGA
AAGATTTAGGTAAGATTGTTGACTTGATGCTTGATGACGTTAACGCCACCTTGACCAAGAAGGGGATTACGTTAACTGTC
ACCGCAGCAGCTAAAGATTGGCTGATTGAACAAGGTTATGATGAAGCAATGGGCGCACGGCCATTACGGCGTGTGATCGA
ACGCAACATTCGTGATAAGGTGACTGACTTCTATTTGGATCATTTAAAGGCTAAGAAGTTGCAAGCTGATCTGGTTGATG
ATGCAATTGTGATTAGCGAGAAGCAACCGACAGCTGTTAAATCAAAGAAAGTAACCGATGGTGCGAAGTAA

Protein sequence :
MANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLG
RNLTQEAKDGLLDPVIGREHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNL
EAGTQYRGSFEEKIQNLIKEVKAAGNVILFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNT
IMKDSALARRFNDVTINEPTAADTVKILEGIKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLA
SKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKTIADKQHQLDGTKDEKPVVATPNDVAAAVERLTGVPVSKLG
ASDIERLKGIGKRLKGKVIGQDEAVEMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRL
DMSEYSDRTAVSKLIGTSAGYVGYNDNNNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKN
TVIIATSNAGFGNETLTGKKEQDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKKDLGKIVDLMLDDVNATLTKKGITLTV
TAAAKDWLIEQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLVDDAIVISEKQPTAVKSKKVTDGAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-114 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBPG_01964 YP_008447219.1 ClpL protein VFG0080 Protein 1e-125 49
LBPG_01964 YP_008447219.1 ClpL protein VFG0079 Protein 3e-115 46