Gene Information

Name : troB (TPE_2756)
Accession : YP_008436364.1
Strain : Treponema pedis T A4
Genome accession: NC_022097
Putative virulence/resistance : Virulence
Product : zinc ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2831998 - 2832882 bp
Length : 885 bp
Strand : -
Note : -

DNA sequence : 
GTGCGGGGATTACCGTACCGGCTTAAAAACGGAGCTCTGTCTTTAAGTAAACATAGCTCCCGATTCGGTTCTAACCTAAG
AAAAGATAAAACACTTGCGATGATAAAAAACAATAAGAATAGTCAATCGGCTGCCGATAAGGATTGCCCTGCGGTTTCCG
TTTCCGATTTAACAATGGCTTATCGCGAAAAGCCGGTACTTTGGGATATCGATATCCGAGTTCCTCAAGGCTCGATGGAA
GCCGTCATAGGGCCTAACGGAGCGGGGAAATCCACTCTGTTAAAAGCTATAATGGGAATTCTTCCCGTCGCTTCGGGTGA
GATAAGGGTATTCGGAAAAAGCTTTAAAAGCCAACGGAAGCGTGTAGCTTATATTCCTCAGAGAAGCTCGGTTGATTGGG
ATTTTCCCACTACGGTTTTCGATGTTGTGCTTATGGGTTCTTACGGAAAACTCGGTTGGATTAAACGTCCCGGTAAACTT
GAAAAAGAACAAACTTATTCGGCTCTTGAAAAAGTCGGCATGGCAGAATTTGCTTCAAGGCAAATAAGCGAGCTTTCAGG
CGGACAGCAACAGCGCATTTTTCTTGCAAGGGCACTTGTTCAAAATGCGGAGCTTTACTTTATGGACGAGCCTTTTCAAG
GTGTAGATGCCGCAACGGAACAGGCAATAGTAAGATTGTTAAAAGAATTAAAGCAATCGGGCAAAACTCTTTTGGTAGTT
CATCACGATTTACAAACCGTAAAAGATTATTTTGACAGGGTTCTTTTGTTAAATGTTCATTTAATAAAAGAAGGGGCGGT
AGAAGAGGTTTTTACACAGGATAATTTACGTATAACTTACGGCGGGCGGGCTGCGTATTCTTCGGAGCAGATATGTGCGG
TATAA

Protein sequence : 
MRGLPYRLKNGALSLSKHSSRFGSNLRKDKTLAMIKNNKNSQSAADKDCPAVSVSDLTMAYREKPVLWDIDIRVPQGSME
AVIGPNGAGKSTLLKAIMGILPVASGEIRVFGKSFKSQRKRVAYIPQRSSVDWDFPTTVFDVVLMGSYGKLGWIKRPGKL
EKEQTYSALEKVGMAEFASRQISELSGGQQQRIFLARALVQNAELYFMDEPFQGVDAATEQAIVRLLKELKQSGKTLLVV
HHDLQTVKDYFDRVLLLNVHLIKEGAVEEVFTQDNLRITYGGRAAYSSEQICAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 6e-48 45
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 8e-48 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-49 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-49 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-49 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-49 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-49 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_008436364.1 zinc ABC transporter ATP-binding protein BAC0400 Protein 2e-88 75
troB YP_008436364.1 zinc ABC transporter ATP-binding protein BAC0350 Protein 2e-49 43
troB YP_008436364.1 zinc ABC transporter ATP-binding protein BAC0440 Protein 1e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_008436364.1 zinc ABC transporter ATP-binding protein VFG0526 Protein 2e-49 43