Gene Information

Name : TPE_2560 (TPE_2560)
Accession : YP_008436168.1
Strain : Treponema pedis T A4
Genome accession: NC_022097
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2635086 - 2636567 bp
Length : 1482 bp
Strand : +
Note : -

DNA sequence : 
ATGACAAATCTTCCGATTAAACAAAACCCTTCCATATACATTGTAGGAGCAGGCTTTGCAGGAACCGCAATTGCAAAAGA
AATTTCTTCAAAAGAAATTTTCGGCAAGGTTTCGGCCTTTTTAGATGACGACCCGAAAAAGATAGGAACAAAAATTGACG
GAGTTCCGGTTTTAGGTTCAATATCGGAAGCGGTGCGCTTAATCAGAATCGACTCGGGAGCGGAAGCCCTAATTGCAATT
CCGAGTATAAGCTCCGAACGTTTACGCGAAATTTTCGGAATACTCAAAAATGCCGGATTTTCACGTATAAAACTTTTACC
TGCAATTTCGCAAATTATAGACGGTTCCGCCCATTTAGTGCAGGCAAGAGATATTGACCCGCAGGACTTACTTAGCCGCA
CCCCCGTAAAAATAAGTTTAAAAAAAAGCCTCGCATATTTAAGGGGAAAACGTGTTTTAATAACCGGAGCGGGAGGCTCA
ATCGGAAGCGAACTTGCACGCCAACTTTTATCCGGCGGTGCGGAACGGCTTTATCTTTTCGGACACGGAGAAAATTCCAT
TTATCAAATTCATAAAGAATTAAAGCTGCTTCAATCCGGAGGAGTAGGAGATAAAGCAACAATAGTGCCGATTATAGGCG
AATTAAAAGACCGTAACTATATGCGCTACATTATCAACAGATTAAAATGCGATGCCGTTTTTCATACGGCGGCTTATAAA
CACGTTCCGCTTATGGAAGAAAACCCCGTAGCCGTAATCGAAAACAATGTTTTCGGAACAAAAAATCTTTTAGACGCCTG
TTTGGAATTCGGAGTAAAAAAATTTGTTTTAATTTCTACGGATAAAGCCGTAGAACCCGTTTCCGTTTACGGTCTTTCAA
AAATGTTAAATGAAAAATCGGTTTTACAAGCTGCGGAAAAAGCAAAAAATTCCAACGAAAATTCGGCTTATATGTTTGTA
CGTTTCGGAAATGTTCTCGGCTCCCGCGGCTCTATTTTTCCTCTTTTTGTAGAGCAGATAAAAACGGGAGGCCCCGTAAC
GGTAACCGATAAAAAAATGACGCGTTATTTTATGACTATTCCGGAAGCCTGCTCCCTCGTGCTTCAAACCGGCGGAGTCG
GAAAATCAGGACAATCTTATCTTCTTGATATGGGAGAACCCGTAAATATTTTTGAAACTGCAAAGCAGTTAATCCGTTAC
ATGGGCTTTGAACCTGAAAAAGATATTAAAATAGAAATTATCGGTGTCCGCGAGGGAGAGCGCCTGGAAGAGCCTCTTTG
GTCAAAAAGCGAATATTTGGAAAAAACCGATTACGAAAAAATAATGCTTTTAAAAGATTCCGTTCCGTTTGATTCGGACA
GGTTAAACTACCTCCTCGAAAAACTGGCTCCGTTTTGTTTTTACACGGAAGGGAAAGAAGACCTTTTCCGAAATAAAGAT
AAAATGAAAAACTTTATACGTAACGAAGGGTTAGTTTTATAA

Protein sequence : 
MTNLPIKQNPSIYIVGAGFAGTAIAKEISSKEIFGKVSAFLDDDPKKIGTKIDGVPVLGSISEAVRLIRIDSGAEALIAI
PSISSERLREIFGILKNAGFSRIKLLPAISQIIDGSAHLVQARDIDPQDLLSRTPVKISLKKSLAYLRGKRVLITGAGGS
IGSELARQLLSGGAERLYLFGHGENSIYQIHKELKLLQSGGVGDKATIVPIIGELKDRNYMRYIINRLKCDAVFHTAAYK
HVPLMEENPVAVIENNVFGTKNLLDACLEFGVKKFVLISTDKAVEPVSVYGLSKMLNEKSVLQAAEKAKNSNENSAYMFV
RFGNVLGSRGSIFPLFVEQIKTGGPVTVTDKKMTRYFMTIPEACSLVLQTGGVGKSGQSYLLDMGEPVNIFETAKQLIRY
MGFEPEKDIKIEIIGVREGERLEEPLWSKSEYLEKTDYEKIMLLKDSVPFDSDRLNYLLEKLAPFCFYTEGKEDLFRNKD
KMKNFIRNEGLVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-64 43
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 6e-66 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TPE_2560 YP_008436168.1 capsular polysaccharide biosynthesis protein VFG1300 Protein 2e-67 44