Gene Information

Name : OCC_05616 (OCC_05616)
Accession : YP_008429527.1
Strain : Thermococcus litoralis DSM 5473
Genome accession: NC_022084
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1359723 - 1361123 bp
Length : 1401 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGAAAGAATATGATTTTGTTATTATTGGAGGTGGAGCGGCGGGATTTGCTGCGGCTTTAAAAGCGGATGAGCTTGATGT
AAAGACCCTCATGGTCAACCGAGGCCCGATTGGAGGGACGTGTGTAAACGTCGGCTGTGTTCCGACTAAGTATCTCCTAA
CCGCCTTGGAACTCAAGAAAAGGGCGTTGATGGGCCATTACTCTGGCCTAAGCTTTACCCTTAAGGAGTTTGACTTTAGA
AAACTGCTGGACGGAAAGGATGAACTCGTAAAAAAGCTAAGGAGGGAGAAGTACGAGAAAGTTCTGGAGAGTCTAGAGAA
CGTGGATTACATCGACGGCTCCGCGAGGTTTAGCTCAAACAGTGAAATCGTGGTAAACGGCGAGAAGATCAAGTTCAAAA
AGGCCCTCATAGCAACGGGTGCAAAGCCAAGAATTTTAACCATAGGCGGTGTTGAAGACGTTAAGGACAGAATTCTAACC
CACATTGAGGCTCTTGAACTTGAAAAGGTTCCCGACTCAGTTGTAATCATCGGGGGAAGAACTCAAGCTTTGGAGTTTGC
CCAGATCTTTGCGAGAGCTGGGAGCGAGGCAACTCTTCTGCAGAGAAGCATGAGGATAATGCCCACAGCTGAGCCTGAAC
TGGCAATAGAACTTGAGGACATTCTAAGTGAGGAGGGGACCAATATAAACACCTCTGCGAGGATAAAACGCCTTGAAAGA
GCTGGAGAAGGAGTTAGAGTTCATGCTGAAGTGGGAGGAAAAGAGAAGATGTTTGAAGCACAATACGTTTTCTTCGCAAC
TGGGAGAAGTCCAAATACCCACGATTTGGGCCTCGAGAACACGGATGTTAAAACCGACGAAAAGGGTTTTGTGGTTGTGG
ATGAAACTCTGAAAGCGGGCAAAAATATTTACGCGGCTGGAGATGTGATAGGTGAGCCTATGTTAGAGACAGTGGCAGCC
AAGGAGGGCTTTACCGCGGCAACAAACGCATTGGAGGAAAAGAACGTTAAAATCGACTATAGAATTGTCCCGAAGGTTGT
GTTCACCGATCCGCAGCTTGTGAGTGTTGGGTTAACCGACAGGGAAGCCCAAAAGTTTACGGAATGCTCATGCAGTGCGG
TAGAGATCTCAAACGTTCCAAAGGCATTGATTCTAGGTGAAGAAAGGGGCCTGATAAAAATGGTCGTTGATGCAAAAACG
AAGGAAATCCTTGGGGTTCATATCTTAGCTTACAACGCCGCTGAGATGATCCCTGAGGCCGCTTTGATAATTAGGAACAG
AATGACTATAGATGAGGTTATAGACACTCTTCACGTCTTCCCGACGATGAGCGAGGCAATAAAGCTTGCCGCACTTTCTT
TCAAAGGAGACATATCAAAAATGCCGTGTTGTGCCCTCTAG

Protein sequence :
MKEYDFVIIGGGAAGFAAALKADELDVKTLMVNRGPIGGTCVNVGCVPTKYLLTALELKKRALMGHYSGLSFTLKEFDFR
KLLDGKDELVKKLRREKYEKVLESLENVDYIDGSARFSSNSEIVVNGEKIKFKKALIATGAKPRILTIGGVEDVKDRILT
HIEALELEKVPDSVVIIGGRTQALEFAQIFARAGSEATLLQRSMRIMPTAEPELAIELEDILSEEGTNINTSARIKRLER
AGEGVRVHAEVGGKEKMFEAQYVFFATGRSPNTHDLGLENTDVKTDEKGFVVVDETLKAGKNIYAAGDVIGEPMLETVAA
KEGFTAATNALEEKNVKIDYRIVPKVVFTDPQLVSVGLTDREAQKFTECSCSAVEISNVPKALILGEERGLIKMVVDAKT
KEILGVHILAYNAAEMIPEAALIIRNRMTIDEVIDTLHVFPTMSEAIKLAALSFKGDISKMPCCAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0085 NP_763640.1 dihydrolipoamide dehydrogenase Not tested SCCpbp4 Protein 1e-72 43
merA BAB47642.1 mercuric reductase Not tested Type-III SCCmec Protein 8e-73 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OCC_05616 YP_008429527.1 hypothetical protein BAC0651 Protein 5e-73 43