Gene Information

Name : pdhD (BASU_1407)
Accession : YP_008420833.1
Strain : Bacillus amyloliquefaciens UCMB5113
Genome accession: NC_022081
Putative virulence/resistance : Unknown
Product : dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes
Function : -
COG functional category : -
COG ID : -
EC number : 1.8.1.4
Position : 1453091 - 1454503 bp
Length : 1413 bp
Strand : +
Note : Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; PubMedId:12682299, 1784816, 6815422, 9352926, 9588797; Product type e:enzyme

DNA sequence :
ATGGTAGTAGGAGATTTCCCTATTGAAACAGATACTCTTGTGATTGGTGCGGGACCCGGCGGCTATGTAGCTGCCATCCG
CGCTGCTCAGCTTGGACAAAAAGTAACAGTCGTTGAAAAAGCAACTCTTGGAGGCGTTTGTCTGAACGTCGGCTGTATTC
CTTCAAAAGCGCTCATTAATGCAGGCCATCGTTACGAGAATGCAAAACATTCAGATGACATGGGAATCACTGCTGAGAAC
GTAACGGTTGACTTTACAAAAGTCCAAGAATGGAAAGCTTCTGTTGTAAATAAGCTTACCGGCGGTGTTGCAGGTCTTTT
AAAAGGAAATAAAGTGGATGTTATAAAAGGGGAAGCTTATTTCGTAGACAGCAACTCTGTCCGTGTAATGGATGAGAACT
CTGCGCAAACATACACATTTAAAAACGCAATCATTGCTACCGGTTCTCGCCCTATCGAATTGCCAAACTTCAAATATAGC
GAACGCGTTCTGAACTCTACAGGCGCACTTGCGCTTAAAGAAATTCCGAAAAAGCTCGTTGTTATCGGCGGCGGATATAT
CGGTACTGAGCTTGGAACAGCGTATGCGAACTTCGGAACTGAATTGGTTATTTTAGAAGGCGGAGATGAAATTCTTCCTG
GCTTCGAAAAACAAATGAGTTCTCTCGTTACCCGCAGACTGAAGAAAAAAGGCAACGTTGAAATCCATACAAGCGCCATG
GCTAAAGGCGTTGAGGAAAGACCTGACGGCGTAACAGTTACATTCGAAGTAAAAGGCGAAGAAAAAACGGTTGATGCTGA
TTACGTATTAATCACTGTCGGACGCCGTCCGAACACTGATGAGCTCGGCCTTGAGCAAGTCGGTATCGAAATGACTGACC
GCGGTGTCATTAAAACAGACAAGCAGTGCCGCACAAACGTACCGAACATTTACGCAATCGGTGACATCATTGACGGACCT
CCGTTGGCTCACAAAGCGTCTTACGAAGGTAAAATCGCTGCCGAAGCTATTTCAGGAGAGCCGGCTGAAATCGATTACCT
CGGTATTCCGGCGGTTGTATTCTCTGAGCCTGAACTGGCTTCTGTCGGTTACACTGAAGCACAGGCGAAAGAAGAAGGCA
TTGAAGTCGTTGCAGCTAAGTTCCCGTTTGCAGCAAACGGACGTGCGCTGTCTCTTAACGAAACTGACGGCTTCATGAAG
CTGATCACTCGTAAAGAAGACGGTCTTGTAATCGGTGCGCAAATTGCCGGCGCAAGCGCTTCTGACATGATTTCTGAATT
GAGCCTGGCGATCGAAGGCGGAATGACTGCTGAAGATATCGCAATGACAATTCACGCTCACCCGACATTGGGCGAAATCA
CTATGGAAGCTGCCGAAGTAGCAATCGGAAGCCCGATCCATATCGTGAAATAA

Protein sequence :
MVVGDFPIETDTLVIGAGPGGYVAAIRAAQLGQKVTVVEKATLGGVCLNVGCIPSKALINAGHRYENAKHSDDMGITAEN
VTVDFTKVQEWKASVVNKLTGGVAGLLKGNKVDVIKGEAYFVDSNSVRVMDENSAQTYTFKNAIIATGSRPIELPNFKYS
ERVLNSTGALALKEIPKKLVVIGGGYIGTELGTAYANFGTELVILEGGDEILPGFEKQMSSLVTRRLKKKGNVEIHTSAM
AKGVEERPDGVTVTFEVKGEEKTVDADYVLITVGRRPNTDELGLEQVGIEMTDRGVIKTDKQCRTNVPNIYAIGDIIDGP
PLAHKASYEGKIAAEAISGEPAEIDYLGIPAVVFSEPELASVGYTEAQAKEEGIEVVAAKFPFAANGRALSLNETDGFMK
LITRKEDGLVIGAQIAGASASDMISELSLAIEGGMTAEDIAMTIHAHPTLGEITMEAAEVAIGSPIHIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0077 NP_763632.1 dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 Not tested SCCpbp4 Protein 5e-114 51