Gene Information

Name : M493_17120 (M493_17120)
Accession : REF_PRJNA208285:M493
Strain : Geobacillus sp. JF8
Genome accession: NC_022080
Putative virulence/resistance : Virulence
Product : C4-dicarboxylate ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3190192 - 3191472 bp
Length : 1281 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
GCAGTCGGGGCCATTCTGATCCCAATGATGACCCAGGCAGGCTACAACCCGAGACGGTCAGCCGGATTAGTGGCAGCTGG
AGGAATCATTGCGCCTATTATTCCCCCGAGTATCCCGTTTATTATCTTTGGGGTAGCGAGCGGTGTATCGATCACAAAGC
TATTTATAGGCGGGATTGTGCCTGGCTTGATGATGGCGTTCGGGTTGGCCATTGTTTGGTGGTATGTATCGAGAAAGGAA
CAGTCTGCGGTTTACCCGAGAAAATCAGCGAAAGAAATGATACAGGCGACGAAGCACGCATTTTGGGGGCTATTGCTGCC
GGTAATTATTTTAGGCGGAATGAAAGGGGGAATTTTTACAGCGACTGAAGCAGCTGCTGTTGCCGTTTTTTATGCCTGGT
TTGTAGGCACTGTGATTTACCGCCAAATTCGGCTGAAGGATTTGTACGATGCGCTTGTGGCCGCTTCGAAAACAACGAGT
GTCGTGATGTTTCTTATTGCCGCATCTATGGTTGCTTCGTGGATGATTACGGTCGCCAATATTCCTTCTTCGATTACAGA
GGTTGTAGCGCCGCTGATGGACGATCCGTTGCTTTTGTTGTTAATGATTAACCTGTTAGTTCTCATTGTCGGCACTGCGA
TGGATTTAACTCCAACGATTCTTGTGCTAACACCTGTTTTGATGCCGATTGTTGAAAAAGCGGGCATTGACCCGGTATAT
TTTGGGATCCTGTTTATTTTAAACAACGCCATTGGCCTTCTCACGCCTCCGGTAGGAACCGTACTCAATGTAGCTTGCGG
GATCGGGAAGATTTCCATGGACGACATTATGAAAGGAGTTTGGCCATTTTTGCTCGTCCAAGTGGTTGTGTTGATTTTGC
TGATCGTTTTCCCGTCATTGGTCACTGTTCCGATTGAGTGGTTTACCCATTAAACCTAAGGCAAGGCGAATGGAGAAAGC
GAAGTTTCGCGCGTTGATAAAGTTGGAAGCCGGCTGAAGCGATGCCGGCTTCTTTTGTGTGCGCCCGGCATGGGTGCAGT
CTATAGGGTGAAAGTCCCGAACTGCGAAGGCAGAAGTAGCAGTTAGCTTAACGCAAGGGTGTCTGCGGCGACGCAGAATC
TGAAGGAAGCGGGCGGCAAACTTCCGGTCTGAGGAACACGAACTTCATAAGAGGCTGGGTATCATTGGGTGAGTTTGCAC
GACAAAACGAAGCCCTTTCTGCCGAAGGTGATACCGAGTAAATGAAGCAGATAGATGGAAGGAAAGACTGCACTCTTACC
C

Protein sequence :
MTITIFVGSLLGAMALGIPIAFALMISAVCLMLYLGMLDSQIVAQTLVNGADSVSLMAIPFFILAGELMNAGGISKRIID
FAISIVGHVRGGLGYVAIMTAVLFACLSGSAVADTAAVGAILIPMMTQAGYNPRRSAGLVAAGGIIAPIIPPSIPFIIFG
VASGVSITKLFIGGIVPGLMMAFGLAIVWWYVSRKEQSAVYPRKSAKEMIQATKHAFWGLLLPVIILGGMKGGIFTATEA
AAVAVFYAWFVGTVIYRQIRLKDLYDALVAASKTTSVVMFLIAASMVASWMITVANIPSSITEVVAPLMDDPLLLLLMIN
LLVLIVGTAMDLTPTILVLTPVLMPIVEKAGIDPVYFGILFILNNAIGLLTPPVGTVLNVACGIGKISMDDIMKGVWPFL
LVQVVVLILLIVFPSLVTVPIEWFTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-38 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-38 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M493_17120 REF_PRJNA208285:M493 C4-dicarboxylate ABC transporter permease VFG1110 Protein 9e-39 41