Gene Information

Name : JCM7686_pAMI8p117 (JCM7686_pAMI8p117)
Accession : YP_008408501.1
Strain :
Genome accession: NC_022050
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 110601 - 111092 bp
Length : 492 bp
Strand : -
Note : -

DNA sequence : 
ATGACGACAACGGGGGCGCAACGCTTGCCGGCGGGGCCGGAGGGCGGGCCGATGACTGAGCAGGAGCAAACCGTCATCCT
TGAGGCGCGTGAGATTCTTGCGCGCTATTTCAACCAAAACCCGCTGCTGACCTCCTGGCAGGCTGTGCTGGACTATTGTG
CCATCGCGGTACGGGGTGAGGTCGAGTGCTTTCATGTTCTCTACCTTGACCGAAAGAACCGGCTGATTTCCGATGTTCGG
GTCTCGGTCGGCACCGTCGATCATGTGCCGGTCTATCCGCGCGAGGTGCTGAAATGTGCGCTTTTGATGAACGCATCGGC
GCTGATCCTGGTCCACAATCACCCCAGTGGTGATCCCGAACCGTCTGATGCCGACCTGAAGATGACGAAGGAGATCCAGA
AGGGCTGCAAAACGCTGGGTCTTACCCTGCATGACCACATCATCGTCGGGGCAGGGCGTGAGATCAGTCTGCGTGCACGC
GGTGATCTCTGA

Protein sequence : 
MTTTGAQRLPAGPEGGPMTEQEQTVILEAREILARYFNQNPLLTSWQAVLDYCAIAVRGEVECFHVLYLDRKNRLISDVR
VSVGTVDHVPVYPREVLKCALLMNASALILVHNHPSGDPEPSDADLKMTKEIQKGCKTLGLTLHDHIIVGAGREISLRAR
GDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-15 42
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-15 42
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-15 42
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JCM7686_pAMI8p117 YP_008408501.1 DNA repair protein RadC VFG1119 Protein 6e-16 42