Gene Information

Name : JCM7686_3087 (JCM7686_3087)
Accession : YP_008405955.1
Strain : Paracoccus aminophilus JCM 7686
Genome accession: NC_022041
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.14
Position : 3191135 - 3192469 bp
Length : 1335 bp
Strand : -
Note : -

DNA sequence : 
ATGGATCAGGCTTTGGCGATTGCCGCGCAGATCGGGGAAGAGCGGCTTATCCGCTATTTCGGCCTTGTCCACGCGATTCA
GGCGGGGGTGGTGCTGGTCTCGGGGCTGAACAATCACGCGGCTTTGGGCGATCGCGTTGTTTTCGACCTGACCGGCGGCG
CACAGATCCAGGGCGAGGTCATTGCGCTACAGGCGCGCTTCGCCGCGATTCTACCGGAAGGCCCGTCCGAGGGGCTGCAT
ATCGGGGCGCGGGCCGAGCTTCTCTTCGCGCCGCGCCTGCGCCCGGGGCCGGATTGGGTCGGTCGGATCATCGACCCTCT
GGGCCAGCCGCTCGATGGTCGCCCGCTTGAGCAGGGCGGCGCAGCGCTGCGCTACCGCGCCCCGCCGCCGCCAGCGGCCA
GCCGCAAGCGGTTGGGCGAGCGGCTCGACACCGGGCTTGCGGTCTTCGACACCTTGCTGCCGATCGTGAAGGGGCAGCGG
CTTGGGCTTTTCGCGGGCTCGGGCGTGGGGAAATCGACGCTGCTCTCGGCGCTGGCCAAAGGGGTTTCGGCCGATGTCGT
GGTGATCGCGCTGATCGGCGAACGCGGGCGCGAGCTCCGCGAATTCGTTGAGGAGGTGCTTGGCCCCGAGGGCATGGCGC
GCGCGGTGGTGGTGGCCGCGACCTCGGATCAGTCGCCGATGATGCGGCGGCGCTGCGCTTGGGCGGGGATGACGGTCGCG
GAATATTTCCGCGATCAGGGCGCGCATGTGCTGTTTTTGGCCGATTCGATCACGCGTTTCGCCGAGGCGCATCGCGAAAT
CGCCCTCGCTGGCGGGGAGAGCCCGAGTTATCGCGGCTTTCCGCCCTCGGTCTCGAACCTCATCATGGCACTGGCCGAAC
GCTCGGGGCCTGGACCGGCGGGGGCGGGCGATATCACCGCGCTCTTTTCGGTGCTGGTCGCGGGCTCGGATATGGAGGAG
CCGATTGCCGATATCCTGCGCGGTGTTCTGGACGGCCATATCGTGCTGGATCGCGCCATTGCCGAACGCGGGCGTTTTCC
TGCAATCGACGTGCTGCGCTCGGTGTCGCGCTCTTTGCCGCAAGCTGCGAGCGAGGCTGAGAATTCCCTGATCGCGCGGG
CGCGGGCCATGCTGGGCAGCTATGCCGAATCAGAGCTGATGATCCGGGCCGGGCTTTATGCGGCAGGCAGTGACCAGATG
CTGGACGAGGCGGTGCGGCTTTACCCCGCGCTCGACAATTTCGTGACCCTGAAGGCTGAAAATACTGCGGAAAGCTTTAC
GCTTTTGGCCGAGGCTCTGGCGCGTGGGCCGCAGAATGCGCCTCGAGCGATGTAG

Protein sequence : 
MDQALAIAAQIGEERLIRYFGLVHAIQAGVVLVSGLNNHAALGDRVVFDLTGGAQIQGEVIALQARFAAILPEGPSEGLH
IGARAELLFAPRLRPGPDWVGRIIDPLGQPLDGRPLEQGGAALRYRAPPPPAASRKRLGERLDTGLAVFDTLLPIVKGQR
LGLFAGSGVGKSTLLSALAKGVSADVVVIALIGERGRELREFVEEVLGPEGMARAVVVAATSDQSPMMRRRCAWAGMTVA
EYFRDQGAHVLFLADSITRFAEAHREIALAGGESPSYRGFPPSVSNLIMALAERSGPGPAGAGDITALFSVLVAGSDMEE
PIADILRGVLDGHIVLDRAIAERGRFPAIDVLRSVSRSLPQAASEAENSLIARARAMLGSYAESELMIRAGLYAAGSDQM
LDEAVRLYPALDNFVTLKAENTAESFTLLAEALARGPQNAPRAM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-63 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-60 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-60 45
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-59 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-59 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-60 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-60 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-60 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-60 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-60 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-55 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-55 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 8e-56 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-56 43
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 3e-55 43
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JCM7686_3087 YP_008405955.1 flagellum-specific ATP synthase VFG0048 Protein 1e-65 48
JCM7686_3087 YP_008405955.1 flagellum-specific ATP synthase VFG2331 Protein 1e-66 47
JCM7686_3087 YP_008405955.1 flagellum-specific ATP synthase VFG0192 Protein 1e-59 45
JCM7686_3087 YP_008405955.1 flagellum-specific ATP synthase VFG0515 Protein 5e-56 43
JCM7686_3087 YP_008405955.1 flagellum-specific ATP synthase VFG2144 Protein 4e-63 41