Gene Information

Name : JCM7686_1775 (JCM7686_1775)
Accession : YP_008404643.1
Strain : Paracoccus aminophilus JCM 7686
Genome accession: NC_022041
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1800428 - 1801081 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGGACAGTCCTTTTCCGCTTCTGATCGCTGCGGCGGGCCTGATGGTCGTGCCCTTCATCGTGGTCAGCCTGACGGCTTT
CGTGAAAATCGCGGTCGTGCTTTTTCTGGTGCGCAGCGCGCTTGGCGTGCAGCAGACGCCGCCAAACCTCGTGCTTTACG
GCGTTACCATCGTGCTGACCGGCTATGTCATGTCGCCGGTGCTCGCGGCCTCGTTTGCCGAGATGACCAACGGTGGCCAG
ATGGATGCCCTGCCGCCGCCCTCGGAATGGCCGGGACTGATCCAGCGAGGGCTTGGCCCCGTGCGCGAGTTCCTGATGCG
CTTCACCACGCCGGTCGATCGCGCGTTTTTTCTCTCGGCCGCTGAAGAGATGCACAAGACCTCGGGCGTGGTGCCAAGCG
AGCAGGATCTCTTCATCCTCGCCCCGGCCTTTGTCACCGCCGAGCTGACCCGTGCCTTTGAAATCGGCGTCATGCTCTAT
CTGCCCTTCATCGTCGTCGATCTGGTCATTACCAATATCCTGACCGCGATGGGCATGATGATGGTCTCGCCCACGGTGAT
CTCGCTGCCCTTCAAGCTGCTTTTGTTCGTGGCGGTCGATGGCTGGGCGCGGCTGACCCATGGACTGGTCATGTCCTATG
TGCCGGGGGTCTGA

Protein sequence : 
MDSPFPLLIAAAGLMVVPFIVVSLTAFVKIAVVLFLVRSALGVQQTPPNLVLYGVTIVLTGYVMSPVLAASFAEMTNGGQ
MDALPPPSEWPGLIQRGLGPVREFLMRFTTPVDRAFFLSAAEEMHKTSGVVPSEQDLFILAPAFVTAELTRAFEIGVMLY
LPFIVVDLVITNILTAMGMMMVSPTVISLPFKLLLFVAVDGWARLTHGLVMSYVPGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-42 53
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-38 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-38 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-33 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-33 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-33 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-37 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-37 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-38 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-38 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-38 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-38 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-34 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-34 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-27 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-31 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-32 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-32 42
escR AAK26700.1 EscR Virulence LEE Protein 5e-32 42
escR AAL57527.1 EscR Virulence LEE Protein 5e-32 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 9e-32 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-32 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 9e-32 42
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-32 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 8e-32 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 8e-32 42
escR AAC31528.1 L0049 Virulence LEE Protein 6e-32 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-31 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-28 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-28 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-27 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-28 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-27 41
escR AAC38369.1 EscR Virulence LEE Protein 5e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0394 Protein 4e-41 52
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0188 Protein 5e-42 51
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0044 Protein 8e-47 49
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0519 Protein 2e-32 42
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0827 Protein 3e-32 42
JCM7686_1775 YP_008404643.1 type III secretion protein VFG0715 Protein 2e-31 41