Gene Information

Name : JCM7686_1588 (JCM7686_1588)
Accession : YP_008404456.1
Strain : Paracoccus aminophilus JCM 7686
Genome accession: NC_022041
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1578212 - 1579033 bp
Length : 822 bp
Strand : +
Note : -

DNA sequence :
ATGACCAATGCGATCTGGGTCTCGGCCCTGGTCGGCGCGGTTTGTGCCTTTCTCTCGGCTTATCTGATGCTCAAGGGCTG
GTCGCTGATCGGCGATGCGCTGAGCCATTCGATCGTGCCGGGCGTCGCGGGCGCCTATATGCTCGGCCTGCCCTTCGCGC
TCGGCGCGTTTCTGTCGGGCGGGCTGGCGGCGCTCGCCATGCAGTTTCTGAACGCGCGCACCGGGCTTAAGGAAGATGCG
GTGATCGGGCTGATTTTTACCGGCTTCTTCGGGCTCGGGTTGTTCATGATCTCGCTCAACCCGATGGCGGTCTCGATCCA
GACGATCACCATGGGCAATATTCTTGCGATCTCGCCCGGAGATACCTTGCAGCTGGTCATCATCGGCGTCGTGTCGCTGG
CGATCCTGACGGCGAAATGGCGCGATCTCATGGTGGTGTTCTTTGACGAGACCCATGCGCGCACCATCGGCCTGAACCCG
ACGGCTTTGCGCGTTCTCTTCTTCACCTTGCTGGCCGCCTGCACGGTTGCCGCCATGCAAACCGTCGGCGCCTTTCTGGT
CATCGCGCTGGTCGTGACACCGGGAGCGACGGCCTATCTCCTTTGCGACCGCTTCCCTCGGCTGATCCTGACCTCGGTTG
CGATTGGCGCGATCACCTCGGGGCTGGGCGCTTATATCTCCTTCTTCCTCGATGGCGCGACCGGAGGTGTGATTGTCGTC
ATGCAGACGGTTCTCTTCCTGCTGGCCTTCGTCTTTGCGCCCAAACACGGCATTCTCGCCGCACGCCGCCGCGCGCGCGC
CGCTTTGCGGGAGGCGCTGTGA

Protein sequence :
MTNAIWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAALAMQFLNARTGLKEDA
VIGLIFTGFFGLGLFMISLNPMAVSIQTITMGNILAISPGDTLQLVIIGVVSLAILTAKWRDLMVVFFDETHARTIGLNP
TALRVLFFTLLAACTVAAMQTVGAFLVIALVVTPGATAYLLCDRFPRLILTSVAIGAITSGLGAYISFFLDGATGGVIVV
MQTVLFLLAFVFAPKHGILAARRRARAALREAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 6e-69 76
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-69 76
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-69 76
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-69 76
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-69 76
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-28 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JCM7686_1588 YP_008404456.1 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0351 Protein 3e-69 76
JCM7686_1588 YP_008404456.1 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0441 Protein 9e-62 68
JCM7686_1588 YP_008404456.1 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0352 Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JCM7686_1588 YP_008404456.1 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC VFG0527 Protein 3e-69 76
JCM7686_1588 YP_008404456.1 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC VFG0528 Protein 2e-28 41