Gene Information

Name : B446_19970 (B446_19970)
Accession : YP_008387617.1
Strain : Streptomyces collinus Tu 365
Genome accession: NC_021985
Putative virulence/resistance : Virulence
Product : ATP-dependent protease ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4612160 - 4614757 bp
Length : 2598 bp
Strand : +
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
GTGGACGCCGAGCTGACCAACAGGAGCCGGGACGCGATCAACGCCGCCGGCAACCGAGCCCTGGCCGGGGGACACCCGGA
CCTCACACCCGCCCACCTGCTCCTCGCCCTGCTCGCGGGGCAGGACAACGAGAACATCACCGACCTGCTCGCCGCCGTGG
AGGCCGACCAGGCTGCCGTGCGCTCCGGCGCCGAGCGCGTGCTCGCCGGGCTGCCCAGCGTGACCGGGTCCACCGTCGCG
CCCCCGCAGCCCAACCGCGAACTGCTCGCCGTGATCGCGGACGCCACCGAACGGGCCGCCGAACTCGGTGACGAGTACCT
GTCCACCGAGCACCTGCTCATCGGCATCGCCGCCAAGGGCGGGGCGGCCGGCGAGGTGCTCACGGCGCAGGGCGCCGACG
CCAGGAAGCTGCAAGAGGCCTTTCGCAAGGCCAGGGGAGGACGCCGCGTGACCACCGCCGATCCCGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACCGCCGCCGCCCGCGAGGGCCGCCTCGACCCGGTCATCGGCCGGGACCAGGA
GATCCGGCGGGTCGTGCAGGTGCTGAGCCGCCGTACCAAGAACAACCCCGTCCTCATCGGTGAGCCGGGCGTCGGCAAGA
CCGCCGTGGTCGAGGGCCTCGCCCAGCGGATCGTCAAGGGCGACGTGCCCGAGTCGCTGCGCGACAAGCGGCTGGTCGCG
CTCGACCTCGGCGCGATGGTCGCCGGCGCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTCGCCGAGAT
CAAGGACTCCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTGGGCGCCGGGGCCGGCGGCGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCGATGCTGGCCCGCGGTGAGCTGCGCATGGTCGGCGCGACCACGCTGGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGAGCGTCGAGGA
CACCATCGCGATCCTGCGCGGTCTGAAGGGCCGCTACGAGGCCCACCACAAGGTGCAGATCGCGGACAGCGCGCTGGTGG
CCGCCGCGACCCTGTCCGACCGGTACATCACCTCGCGCTTCCTGCCCGACAAGGCCATCGACCTGGTGGACGAGTCGGCC
TCCCGGCTGCGCATGGAGATCGACTCCTCGCCGGTCGAGATCGACGAGCTCCAGCGCTCCGTCGACCGGCTGAAGATGGA
GGAGCTGGCGATCGCCAAGGAGACCGACCCGGCCTCCCGCGAACGCCTGGACAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTGACCGCCCGCTGGGAGAAGGAGAAGGAGTCCCTCAACCGGGTCGGTGAGCTGAAGGAGCGC
CTGGACGACCTGCGCGGCCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACCGCCGCCAAGCTGCTGTACGGCGA
GATCCCGCAGCTGGAGAAGGAGCTGGAGGCCGCCTCCGAGGCGGAGGAGGAGGTCGCCCGGGACACCATGGTCAAGGAGG
AGGTCGGCTCCGACGACATCGCCGACGTCGTCGCCGCCTGGACCGGCATCCCGGCCGGCCGCCTGATGGAGGGCGAGACG
CAGAAGCTGCTGCGCATGGAGGACGAGCTGGGCCGGCGGCTCATCGGCCAGGGCGAGGCGGTGCGCGCGGTGAGCGACGC
CGTACGGCGCTCACGGGCCGGCATCGCCGACCCCGACCGCCCGACCGGGTCCTTCCTCTTCCTCGGCCCGACCGGCGTCG
GCAAGACCGAACTCGCCAAGGCTCTCGCCGACTTCCTGTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGTCCGAG
TACGGCGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCGCCTCCCGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTCCGCCGGCGGCCGTACAGCGTGGTGCTGCTGGACGAGGTCGAGAAGGCCCACCCGGAGGTCTTCGACGTCC
TGCTCCAGGTGCTGGACGACGGCCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACCATCCTGGTGCTC
ACCTCCAACCTGGGCAGCCAGTACCTGGTCGACCCGGTCTCCAGCGAGGCGGAGAAGCGGGAGCAGGTCCTGGAGGTCGT
ACGGGCCTCTTTCAAGCCGGAATTCCTGAACCGGCTCGACGACCTCGTGGTCTTCTCCGCGCTCACCAAGCCCGAGCTGG
AGCGGATCGCGAAGCTCCAGATCGACCGGCTGGCCAGGCGGCTGGCCGAGCGGCGCCTCACGCTGGACATCACCCCCGAG
GCGCTCGCCTGGCTCGCCGAGGAGGGGATGGACCCGGCCTACGGCGCCCGTCCGCTGCGCCGTCTGGTGCAGACCTCGAT
CGGCGACCGGCTCGCCAAGGAGATCCTGTCCGGCGAGATCAAGGACGGCGACACGGTCCGGGTGGACCGCTTCGACCAGG
GGCTGCTGGTCGGCCCGGCGACGGGCAAGACCCTCTAG

Protein sequence :
MDAELTNRSRDAINAAGNRALAGGHPDLTPAHLLLALLAGQDNENITDLLAAVEADQAAVRSGAERVLAGLPSVTGSTVA
PPQPNRELLAVIADATERAAELGDEYLSTEHLLIGIAAKGGAAGEVLTAQGADARKLQEAFRKARGGRRVTTADPEGQYK
ALEKFGTDFTAAAREGRLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLRDKRLVA
LDLGAMVAGAKYRGEFEERLKAVLAEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDESA
SRLRMEIDSSPVEIDELQRSVDRLKMEELAIAKETDPASRERLDKLRRDLADKEEELRGLTARWEKEKESLNRVGELKER
LDDLRGQAERAQRDGDFDTAAKLLYGEIPQLEKELEAASEAEEEVARDTMVKEEVGSDDIADVVAAWTGIPAGRLMEGET
QKLLRMEDELGRRLIGQGEAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQYLVDPVSSEAEKREQVLEVVRASFKPEFLNRLDDLVVFSALTKPELERIAKLQIDRLARRLAERRLTLDITPE
ALAWLAEEGMDPAYGARPLRRLVQTSIGDRLAKEILSGEIKDGDTVRVDRFDQGLLVGPATGKTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-96 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B446_19970 YP_008387617.1 ATP-dependent protease ATP-binding subunit VFG2076 Protein 5e-111 44
B446_19970 YP_008387617.1 ATP-dependent protease ATP-binding subunit VFG2084 Protein 2e-102 43